mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 23 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 68,443 | 0 | T | G | 60.0% | 8.9 / 11.9 | 15 | G202G (GGT→GGG) | yabI | DedA family protein |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 60.0% | ‑2.4 / 20.8 | 20 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 57.1% | 10.5 / 14.5 | 14 | G20G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 3,738,694 | 0 | T | C | 57.1% | 0.8 / 10.8 | 14 | P177P (CCT→CCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 55.0% | 1.5 / 22.9 | 20 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 4,049,475 | 0 | A | C | 53.8% | 22.0 / 30.1 | 26 | G75G (GGT→GGG) | glnL | nitrogen regulation protein NR(II) |
| * | NZ_CP009273 | 4,368,613 | 0 | T | A | 53.8% | 6.8 / 15.4 | 13 | Y50F (TAT→TTT) | ampC | BlaEC family class C beta‑lactamase |
| * | NZ_CP009273 | 3,588,734 | 0 | A | C | 53.3% | 11.3 / 18.0 | 15 | V36G (GTG→GGG) | livM | branched chain amino acid ABC transporter permease LivM |
| * | NZ_CP009273 | 2,354,816 | 0 | A | C | 52.9% | 9.4 / 17.6 | 17 | G26G (GGT→GGG) | rhmD | L‑rhamnonate dehydratase |
| * | NZ_CP009273 | 890,381 | 0 | A | C | 52.4% | 21.5 / 25.4 | 21 | intergenic (+29/‑66) | potF/potG | spermidine/putrescine ABC transporter substrate‑binding protein PotF/putrescine ABC transporter ATP‑binding subunit PotG |
| * | NZ_CP009273 | 1,927,661 | 0 | A | T | 52.4% | 7.3 / 29.6 | 21 | S401T (TCA→ACA) | edd | phosphogluconate dehydratase |
| * | NZ_CP009273 | 3,454,136 | 0 | A | C | 52.4% | 22.6 / 25.2 | 21 | T321P (ACC→CCC) | gspF | type II secretion system inner membrane protein GspF |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 51.7% | 29.2 / 56.8 | 29 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,549,566 | 0 | T | C | 44.4% | 31.3 / 10.5 | 27 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 44.4% | 15.4 / 14.7 | 27 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 44.4% | 16.8 / 13.8 | 27 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,326,718 | 0 | T | A | 42.9% | 30.3 / 12.2 | 28 | Y44F (TAT→TTT) | adiC | arginine/agmatine antiporter |
| * | NZ_CP009273 | 2,356,152 | 0 | C | A | 40.9% | 28.5 / 10.2 | 22 | A321S (GCC→TCC) | yfaY | nicotinamide mononucleotide deamidase‑related protein YfaY |
| * | NZ_CP009273 | 3,776,279 | 0 | T | A | 40.5% | 27.0 / 11.4 | 38 | D248V (GAT→GTT) | gpsA | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| * | NZ_CP009273 | 3,549,559 | 0 | G | A | 40.0% | 23.5 / 11.0 | 25 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |