mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 139 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,145,167 | 0 | G | T | 60.0% | ‑2.8 / 12.9 | 25 | intergenic (+40/+25) | yegJ/pphC | DUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC |
| * | NZ_CP009273 | 4,084,653 | 0 | A | C | 60.0% | 4.8 / 10.8 | 21 | G358G (GGT→GGG) | frvB | PTS fructose‑like transporter subunit IIBC |
| * | NZ_CP009273 | 949,854 | 0 | A | C | 58.3% | 2.7 / 15.4 | 24 | G23G (GGT→GGG) | focA | formate transporter FocA |
| * | NZ_CP009273 | 1,125,835 | 0 | A | C | 56.8% | 18.0 / 31.2 | 37 | V162G (GTA→GGA) | flgA | flagellar basal body P‑ring formation chaperone FlgA |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 56.5% | 16.5 / 85.1 | 69 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,125,830 | 0 | C | T | 55.9% | 2.1 / 36.1 | 35 | A164T (GCG→ACG) | flgA | flagellar basal body P‑ring formation chaperone FlgA |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 54.8% | 9.7 / 37.9 | 31 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 53.3% | 23.0 / 28.1 | 30 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 53.3% | 19.5 / 27.2 | 30 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 4,612,067 | 0 | A | G | 52.8% | 39.3 / 66.0 | 53 | E161G (GAG→GGG) | yjjJ | type II toxin‑antitoxin system HipA family toxin YjjJ |
| * | NZ_CP009273 | 890,381 | 0 | A | C | 52.6% | 11.9 / 13.9 | 19 | intergenic (+29/‑66) | potF/potG | spermidine/putrescine ABC transporter substrate‑binding protein PotF/putrescine ABC transporter ATP‑binding subunit PotG |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 52.6% | 12.7 / 55.5 | 38 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 52.5% | 12.8 / 54.1 | 40 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 4,501,865 | 0 | A | C | 52.0% | 12.6 / 21.4 | 25 | L123V (TTG→GTG) | fecD | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 50.7% | 31.6 / 95.0 | 69 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 701,009 | 0 | T | A | 50.0% | 8.4 / 14.3 | 22 | I537N (ATC→AAC) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 50.0% | 39.3 / 18.4 | 40 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 71,566 | 0 | C | T | 47.4% | 6.7 / 12.3 | 19 | L134L (CTG→CTA) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 1,927,661 | 0 | A | T | 46.9% | 21.9 / 24.9 | 33 | S401T (TCA→ACA) | edd | phosphogluconate dehydratase |
| * | NZ_CP009273 | 585,386 | 0 | A | G | 45.2% | 29.3 / 12.6 | 31 | L342P (CTC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 282361 | 69 (1.240) | 4 (0.080) | 4/144 | 3.4 | 6.1% | coding (1256/1383 nt) | yagG | MFS transporter |
| ? | NZ_CP009273 | = 282393 | 62 (1.270) | coding (1288/1383 nt) | yagG | MFS transporter | |||||
| * | ? | NZ_CP009273 | = 1704639 | 40 (0.720) | 4 (0.080) | 4/154 | 3.6 | 9.8% | coding (179/621 nt) | rsxG | electron transport complex subunit RsxG |
| ? | NZ_CP009273 | = 1704663 | 36 (0.690) | coding (203/621 nt) | rsxG | electron transport complex subunit RsxG | |||||
| * | ? | NZ_CP009273 | = 4453155 | 75 (1.350) | 4 (0.070) | 4/160 | 3.7 | 5.4% | coding (1372/1656 nt) | treC | alpha,alpha‑phosphotrehalase |
| ? | NZ_CP009273 | = 4453160 | 67 (1.240) | coding (1367/1656 nt) | treC | alpha,alpha‑phosphotrehalase | |||||
| * | ? | NZ_CP009273 | = 1681263 | 36 (0.650) | 4 (0.080) | 3/140 | 3.7 | 7.6% | coding (1372/1647 nt) | fumB | class I fumarate hydratase |
| ? | NZ_CP009273 | = 4335764 | 66 (1.390) | coding (1380/1647 nt) | fumB | class I fumarate hydratase | |||||
| * | ? | NZ_CP009273 | = 938985 | 49 (0.880) | 4 (0.070) | 4/160 | 3.7 | 7.9% | coding (116/618 nt) | dmsB | dimethylsulfoxide reductase subunit B |
| ? | NZ_CP009273 | 938990 = | 46 (0.850) | coding (121/618 nt) | dmsB | dimethylsulfoxide reductase subunit B | |||||
| * | ? | NZ_CP009273 | = 2974100 | 50 (0.900) | 3 (0.060) | 3/142 | 3.8 | 6.3% | intergenic (‑106/+23) | ygeA/araE | amino acid racemase/arabinose‑proton symporter AraE |
| ? | NZ_CP009273 | = 2974105 | 46 (0.960) | intergenic (‑111/+18) | ygeA/araE | amino acid racemase/arabinose‑proton symporter AraE | |||||
| * | ? | NZ_CP009273 | = 2454092 | 52 (0.940) | 3 (0.060) | 3/146 | 3.8 | 6.8% | intergenic (‑144/+37) | fadI/yfcZ | acetyl‑CoA C‑acyltransferase FadI/YfcZ/YiiS family protein |
| ? | NZ_CP009273 | = 2454103 | 36 (0.730) | intergenic (‑155/+26) | fadI/yfcZ | acetyl‑CoA C‑acyltransferase FadI/YfcZ/YiiS family protein | |||||
| * | ? | NZ_CP009273 | = 508794 | 59 (1.060) | 3 (0.060) | 3/144 | 3.8 | 5.7% | coding (763/1293 nt) | ybaT | APC family permease |
| ? | NZ_CP009273 | = 508809 | 47 (0.970) | coding (778/1293 nt) | ybaT | APC family permease | |||||
| * | ? | NZ_CP009273 | 470194 = | 40 (0.720) | 3 (0.060) | 3/146 | 3.8 | 6.8% | coding (424/861 nt) | tesB | acyl‑CoA thioesterase II |
| ? | NZ_CP009273 | 470249 = | 47 (0.950) | coding (369/861 nt) | tesB | acyl‑CoA thioesterase II | |||||
| * | ? | NZ_CP009273 | = 3635808 | 82 (1.480) | 3 (0.060) | 3/150 | 3.9 | 4.3% | coding (685/753 nt) | rsmJ | 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ |
| ? | NZ_CP009273 | = 3635857 | 59 (1.160) | coding (636/753 nt) | rsmJ | 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ | |||||