mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,774,215 | 0 | T | G | 68.4% | 1.3 / 11.8 | 19 | G343G (GGT→GGG) | lldD | quinone‑dependent L‑lactate dehydrogenase |
| * | NZ_CP009273 | 700,996 | 0 | C | A | 64.3% | ‑2.7 / 11.0 | 14 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 63.6% | 1.6 / 14.4 | 22 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 63.6% | ‑2.6 / 14.5 | 22 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,292,471 | 0 | A | G | 61.9% | 6.3 / 18.2 | 21 | F142S (TTC→TCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 701,032 | 0 | A | G | 61.5% | 3.7 / 11.7 | 13 | T545A (ACA→GCA) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 2,678,659 | 0 | A | C | 57.1% | 9.6 / 14.8 | 14 | Y70D (TAT→GAT) | glyA | serine hydroxymethyltransferase |
| * | NZ_CP009273 | 115,871 | 0 | T | G | 56.2% | 12.4 / 17.4 | 16 | V35G (GTG→GGG) | ampE | beta‑lactamase regulator AmpE |
| * | NZ_CP009273 | 807,177 | 0 | T | G | 55.6% | 14.6 / 20.5 | 18 | V67G (GTG→GGG) | bioC | malonyl‑ACP O‑methyltransferase BioC |
| * | NZ_CP009273 | 2,272,186 | 0 | C | A | 55.6% | 3.9 / 12.9 | 9 | G352C (GGC→TGC) | bcr | multidrug efflux MFS transporter Bcr |
| * | NZ_CP009273 | 4,292,475 | 0 | T | G | 55.0% | 15.1 / 17.7 | 20 | T141P (ACC→CCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 15,410 | 0 | T | G | 54.5% | 2.4 / 11.1 | 11 | intergenic (+112/‑35) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| * | NZ_CP009273 | 276,800 | 0 | A | C | 54.5% | 6.8 / 11.0 | 11 | Y299D (TAT→GAT) | yagA | IS481‑like element ISEc19 family transposase |
| * | NZ_CP009273 | 842,901 | 0 | A | T | 54.5% | 6.0 / 12.8 | 11 | I187N (ATC→AAC) | glnH | glutamine ABC transporter substrate‑binding protein GlnH |
| * | NZ_CP009273 | 1,598,499 | 0 | G | T | 54.5% | 2.1 / 13.0 | 11 | G66C (GGT→TGT) | lsrD | autoinducer 2 ABC transporter permease LsrD |
| * | NZ_CP009273 | 3,406,276 | 0 | A | C | 54.5% | 8.8 / 11.8 | 11 | G183G (GGT→GGG) | acrS | multidrug efflux transporter transcriptional repressor AcrS |
| * | NZ_CP009273 | 3,964,457 | 0 | T | G | 53.8% | 6.9 / 14.3 | 13 | V322G (GTG→GGG) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
| * | NZ_CP009273 | 4,086,499 | 0 | C | A | 53.3% | 8.6 / 24.0 | 15 | V100V (GTG→GTT) | rhaM | L‑rhamnose mutarotase |
| * | NZ_CP009273 | 4,475,322 | 0 | T | G | 53.3% | 15.4 / 17.0 | 15 | E149D (GAA→GAC) | pepA | leucyl aminopeptidase |
| * | NZ_CP009273 | 4,558,321 | 0 | T | G | 52.6% | 21.8 / 24.2 | 19 | T6P (ACC→CCC) | mdtM | multidrug efflux MFS transporter MdtM |