mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 66.7% | 4.5 / 16.1 | 27 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,225,954 | 0 | A | G | 64.7% | ‑3.0 / 14.5 | 17 | S41G (AGT→GGT) | yjbE | exopolysaccharide production protein YjbE |
| * | NZ_CP009273 | 3,659,046 | 0 | A | T | 63.2% | ‑2.0 / 16.9 | 19 | I42N (ATT→AAT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 61.9% | 7.5 / 17.7 | 21 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 61.1% | ‑1.0 / 15.9 | 18 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 60.0% | 2.3 / 13.6 | 15 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 60.0% | ‑1.2 / 23.3 | 21 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 59.3% | ‑4.5 / 23.5 | 27 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 58.8% | 11.9 / 14.9 | 17 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 58.8% | 5.0 / 13.7 | 17 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,152,745 | 0 | A | G | 57.1% | 8.5 / 13.9 | 14 | G171G (GGA→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 57.1% | ‑0.5 / 11.7 | 14 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 642,203 | 0 | T | G | 56.2% | 4.6 / 16.8 | 16 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NZ_CP009273 | 3,401,195 | 0 | T | G | 56.2% | 9.3 / 16.4 | 16 | V77G (GTA→GGA) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 883,470 | 0 | T | G | 54.5% | 6.7 / 11.0 | 11 | intergenic (+55/+120) | rcdA/ybjL | DNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter |
| * | NZ_CP009273 | 1,485,360 | 0 | A | C | 54.5% | 2.8 / 10.8 | 11 | T68P (ACC→CCC) | cybB | cytochrome b561 |
| * | NZ_CP009273 | 1,548,312 | 0 | T | G | 53.3% | 7.4 / 15.5 | 15 | T539P (ACC→CCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 4,248,902 | 0 | T | G | 53.3% | 11.7 / 16.4 | 15 | G393G (GGT→GGG) | dinF | MATE family efflux transporter DinF |
| * | NZ_CP009273 | 3,659,067 | 0 | A | C | 52.6% | 7.7 / 14.7 | 19 | V35G (GTT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 52.4% | 16.4 / 27.6 | 21 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |