mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,774,215 | 0 | T | G | 57.1% | 8.5 / 13.9 | 21 | G343G (GGT→GGG) | lldD | quinone‑dependent L‑lactate dehydrogenase |
| * | NZ_CP009273 | 4,058,940 | 0 | T | A | 57.1% | ‑1.1 / 14.9 | 14 | T63S (ACC→TCC) | yihO | MFS transporter |
| * | NZ_CP009273 | 4,058,956 | 0 | C | A | 57.1% | 2.4 / 12.9 | 14 | L57L (CTG→CTT) | yihO | MFS transporter |
| * | NZ_CP009273 | 3,502,009 | 0 | C | G | 56.2% | 9.9 / 19.7 | 16 | A388A (GCG→GCC) | yhfW | phosphopentomutase |
| * | NZ_CP009273 | 3,806,152 | 0 | C | A | 55.6% | ‑0.8 / 10.5 | 9 | T21N (ACC→AAC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 3,090,826 | 0 | T | G | 53.8% | 9.1 / 12.7 | 13 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
| * | NZ_CP009273 | 15,410 | 0 | T | G | 53.3% | 9.8 / 14.9 | 15 | intergenic (+112/‑35) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| * | NZ_CP009273 | 4,464,532 | 0 | T | G | 52.9% | 10.2 / 12.4 | 17 | *198G (TGA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 52.0% | 11.3 / 37.9 | 25 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,440,600 | 0 | T | G | 52.0% | 15.9 / 26.2 | 25 | G274G (GGT→GGG) | ytfQ | galactofuranose ABC transporter substrate‑binding protein YtfQ |