mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 24 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 61.9% | ‑0.2 / 14.0 | 21 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 61.9% | ‑5.2 / 16.4 | 21 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 2,356,152 | 0 | C | A | 60.0% | 1.4 / 12.2 | 10 | A321S (GCC→TCC) | yfaY | nicotinamide mononucleotide deamidase‑related protein YfaY |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 58.8% | ‑2.5 / 16.5 | 17 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 216,602 | 0 | A | C | 58.3% | 5.5 / 11.3 | 12 | *272E (TAA→GAA) | metQ | methionine ABC transporter substrate‑binding lipoprotein MetQ |
| * | NZ_CP009273 | 2,769,914 | 0 | A | G | 57.1% | ‑1.1 / 10.1 | 15 | E57G (GAG→GGG) | yfjY | RadC family protein |
| * | NZ_CP009273 | 4,195,536 | 0 | G | T | 55.6% | 5.7 / 12.7 | 9 | T108T (ACC→ACA) | purD | phosphoribosylamine‑‑glycine ligase |
| * | NZ_CP009273 | 4,195,549 | 0 | G | T | 55.6% | 5.2 / 12.7 | 9 | S104* (TCA→TAA) | purD | phosphoribosylamine‑‑glycine ligase |
| * | NZ_CP009273 | 172,772 | 0 | A | G | 54.5% | 5.6 / 12.6 | 11 | G393G (GGA→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 636,336 | 0 | T | G | 54.5% | 6.9 / 11.9 | 11 | G376G (GGT→GGG) | ahpF | alkyl hydroperoxide reductase subunit F |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 54.5% | 1.7 / 12.4 | 11 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,199,811 | 0 | C | A | 54.5% | 3.5 / 15.2 | 11 | intergenic (‑196/‑11) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 53.8% | 4.5 / 13.1 | 13 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 4,224,171 | 0 | A | C | 53.8% | 4.2 / 14.9 | 13 | P162P (CCA→CCC) | pgi | glucose‑6‑phosphate isomerase |
| * | NZ_CP009273 | 368,096 | 0 | T | G | 53.3% | 15.6 / 17.6 | 15 | L176V (TTA→GTA) | mhpD | 2‑keto‑4‑pentenoate hydratase |
| * | NZ_CP009273 | 1,500,295 | 0 | A | C | 52.9% | 17.8 / 22.2 | 17 | F15V (TTT→GTT) | ydcO | BenE family transporter YdcO |
| * | NZ_CP009273 | 1,673,569 | 0 | A | C | 52.9% | 7.9 / 16.8 | 17 | T296P (ACC→CCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 3,775,223 | 0 | T | G | 52.9% | 16.5 / 19.9 | 17 | T234P (ACC→CCC) | cysE | serine O‑acetyltransferase |
| * | NZ_CP009273 | 1,430,449 | 0 | A | C | 52.6% | 20.3 / 25.8 | 19 | G234G (GGT→GGG) | ompN | porin OmpN |
| * | NZ_CP009273 | 349,993 | 0 | T | G | 52.3% | 47.6 / 56.0 | 44 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |