mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 61 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 68.4% | 5.4 / 13.3 | 19 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 792,067 | 0 | A | C | 62.5% | 14.6 / 16.8 | 16 | T20P (ACG→CCG) | modC | molybdenum ABC transporter ATP‑binding protein ModC |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 61.1% | ‑3.8 / 13.6 | 18 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 3,775,223 | 0 | T | G | 60.0% | 13.0 / 21.2 | 25 | T234P (ACC→CCC) | cysE | serine O‑acetyltransferase |
| * | NZ_CP009273 | 612,014 | 0 | A | G | 58.3% | 6.0 / 11.5 | 12 | D801G (GAT→GGT) | entF | enterobactin non‑ribosomal peptide synthetase EntF |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 58.3% | ‑2.1 / 11.6 | 12 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 57.9% | 13.5 / 17.8 | 19 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 56.7% | 4.7 / 32.1 | 30 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 69,900 | 0 | A | C | 56.2% | 21.0 / 33.4 | 32 | V370G (GTG→GGG) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease ThiP |
| * | NZ_CP009273 | 3,471,278 | 0 | G | C | 55.6% | 6.9 / 10.6 | 9 | C193W (TGC→TGG) | slyD | peptidylprolyl isomerase |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 55.6% | 8.3 / 41.7 | 27 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 55.0% | 18.3 / 27.6 | 20 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 4,058,951 | 0 | G | C | 55.0% | 19.2 / 28.6 | 20 | A59G (GCG→GGG) | yihO | MFS transporter |
| * | NZ_CP009273 | 4,561,000 | 0 | A | C | 55.0% | 15.3 / 25.9 | 20 | V131G (GTG→GGG) | yjiR | PLP‑dependent aminotransferase family protein |
| * | NZ_CP009273 | 1,500,285 | 0 | A | C | 54.5% | 6.4 / 12.1 | 11 | V18G (GTA→GGA) | ydcO | BenE family transporter YdcO |
| * | NZ_CP009273 | 1,500,295 | 0 | A | C | 53.8% | 11.9 / 16.9 | 13 | F15V (TTT→GTT) | ydcO | BenE family transporter YdcO |
| * | NZ_CP009273 | 782,311 | 0 | A | C | 53.3% | 14.7 / 20.7 | 15 | G247G (GGT→GGG) | gpmA | 2,3‑diphosphoglycerate‑dependent phosphoglycerate mutase |
| * | NZ_CP009273 | 4,612,067 | 0 | A | G | 52.6% | 32.8 / 54.1 | 38 | E161G (GAG→GGG) | yjjJ | type II toxin‑antitoxin system HipA family toxin YjjJ |
| * | NZ_CP009273 | 1,026,452 | 0 | A | C | 52.4% | 24.0 / 26.7 | 21 | G141G (GGT→GGG) | yccA | FtsH protease modulator YccA |
| * | NZ_CP009273 | 1,329,948 | 0 | T | G | 52.4% | 25.2 / 28.5 | 21 | intergenic (+24/‑140) | BW25113_RS25560/acnA | hypothetical protein/aconitate hydratase AcnA |