mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 32 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 68.4% | 4.5 / 11.7 | 19 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 60.0% | 5.8 / 13.5 | 15 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 612,012 | 0 | T | G | 58.3% | 9.1 / 12.3 | 12 | G800G (GGT→GGG) | entF | enterobactin non‑ribosomal peptide synthetase EntF |
| * | NZ_CP009273 | 612,020 | 0 | A | T | 58.3% | 2.5 / 10.1 | 12 | Y803F (TAT→TTT) | entF | enterobactin non‑ribosomal peptide synthetase EntF |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 58.3% | 2.3 / 43.9 | 36 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,199,803 | 0 | T | A | 57.9% | 1.3 / 20.3 | 19 | intergenic (‑188/‑19) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 832,048 | 0 | T | G | 56.2% | 9.7 / 14.8 | 16 | V81G (GTC→GGC) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 3,964,452 | 0 | T | G | 56.2% | 10.9 / 17.9 | 16 | G320G (GGT→GGG) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase (non‑hydrolyzing) |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 55.6% | 9.3 / 44.7 | 36 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 54.5% | 5.9 / 12.4 | 11 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 54.5% | 18.9 / 25.6 | 22 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 54.2% | 7.7 / 30.2 | 24 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |
| * | NZ_CP009273 | 3,401,190 | 0 | C | G | 54.2% | 21.0 / 35.1 | 24 | G75G (GGC→GGG) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 263,424 | 0 | A | C | 53.8% | 5.8 / 11.1 | 14 | V98G (GTG→GGG) | yafZ | DUF932 domain‑containing protein |
| * | NZ_CP009273 | 368,096 | 0 | T | G | 53.8% | 11.5 / 16.4 | 13 | L176V (TTA→GTA) | mhpD | 2‑keto‑4‑pentenoate hydratase |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 53.3% | 13.0 / 18.5 | 15 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 53.3% | 5.1 / 18.8 | 15 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 53.3% | 1.4 / 14.9 | 15 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 1,125,835 | 0 | A | C | 53.3% | 12.7 / 18.0 | 15 | V162G (GTA→GGA) | flgA | flagellar basal body P‑ring formation chaperone FlgA |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 53.3% | 10.5 / 18.7 | 16 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |