mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 59 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,213,865 | 0 | G | T | 61.9% | 3.1 / 23.1 | 21 | S361I (AGT→ATT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 1,213,870 | 0 | A | C | 61.9% | 10.6 / 17.6 | 21 | T363P (ACC→CCC) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 892,811 | 0 | T | G | 61.5% | 6.9 / 12.4 | 13 | V91G (GTG→GGG) | potI | putrescine ABC transporter permease PotI |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 61.1% | 3.3 / 15.5 | 18 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 61.1% | ‑1.7 / 19.0 | 18 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,429,964 | 0 | C | A | 61.1% | 12.4 / 26.1 | 18 | intergenic (‑88/+53) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 1,429,975 | 0 | G | A | 61.1% | ‑1.1 / 18.3 | 18 | intergenic (‑99/+42) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 1,429,978 | 0 | T | A | 61.1% | ‑1.2 / 20.9 | 18 | intergenic (‑102/+39) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 1,429,984 | 0 | G | A | 61.1% | ‑6.4 / 18.4 | 18 | intergenic (‑108/+33) | uspF/ompN | universal stress protein UspF/porin OmpN |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 60.0% | 15.4 / 27.5 | 25 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 2,360,810 | 0 | A | G | 59.1% | 12.4 / 24.7 | 22 | G87G (GGA→GGG) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| * | NZ_CP009273 | 3,401,174 | 0 | A | T | 57.1% | 6.4 / 19.9 | 21 | Y70F (TAT→TTT) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 906,367 | 0 | T | G | 56.2% | 12.6 / 19.6 | 16 | T47P (ACC→CCC) | poxB | ubiquinone‑dependent pyruvate dehydrogenase |
| * | NZ_CP009273 | 906,370 | 0 | A | G | 56.2% | 8.2 / 19.9 | 16 | S46P (TCC→CCC) | poxB | ubiquinone‑dependent pyruvate dehydrogenase |
| * | NZ_CP009273 | 2,669,465 | 0 | C | A | 55.0% | 10.8 / 27.2 | 20 | L240F (TTG→TTT) | yphD | ABC transporter permease |
| * | NZ_CP009273 | 3,020,300 | 0 | A | C | 55.0% | 12.2 / 20.1 | 20 | E391D (GAA→GAC) | guaD | guanine deaminase |
| * | NZ_CP009273 | 970,178 | 0 | A | G | 54.5% | 7.1 / 12.2 | 11 | E135G (GAG→GGG) | mukF | chromosome partition protein MukF |
| * | NZ_CP009273 | 970,180 | 0 | C | G | 54.5% | 3.1 / 11.7 | 11 | L136V (CTC→GTC) | mukF | chromosome partition protein MukF |
| * | NZ_CP009273 | 3,498,440 | 0 | C | T | 54.2% | 13.0 / 31.1 | 24 | E314K (GAA→AAA) | yhfS | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme |
| * | NZ_CP009273 | 982,470 | 0 | A | C | 53.8% | 6.0 / 14.0 | 13 | intergenic (‑32/+571) | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 454243 = | 19 (0.620) | 3 (0.100) | 3/162 | 2.7 | 14.1% | intergenic (+87/‑101) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La |
| ? | NZ_CP009273 | 603467 = | NA (NA) | intergenic (+23/‑54) | hokE/BW25113_RS03025 | type I toxin‑antitoxin system toxin HokE/IS4‑like element IS421 family transposase | |||||