mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,336,778 | 0 | T | A | 63.6% | ‑0.4 / 22.1 | 22 | M291L (ATG→TTG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 63.2% | 11.1 / 17.3 | 19 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 3,124,799 | 0 | T | C | 60.0% | 3.5 / 13.8 | 15 | pseudogene (969/1065 nt) | yghQ | lipopolysaccharide biosynthesis protein |
| * | NZ_CP009273 | 4,227,178 | 0 | T | C | 60.0% | 7.6 / 16.0 | 15 | D118D (GAT→GAC) | yjbG | capsule biosynthesis GfcC family protein |
| * | NZ_CP009273 | 2,475,283 | 0 | G | A | 58.3% | 3.5 / 11.9 | 12 | P125S (CCA→TCA) | emrY | multidrug efflux MFS transporter permease subunit EmrY |
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 58.3% | ‑2.2 / 11.8 | 12 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 3,199,803 | 0 | T | A | 58.3% | 1.5 / 13.1 | 12 | intergenic (‑188/‑19) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 3,549,566 | 0 | T | C | 57.1% | 1.8 / 25.8 | 21 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 55.6% | 9.2 / 20.5 | 18 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 360,759 | 0 | T | G | 54.5% | 3.6 / 11.4 | 11 | T329P (ACC→CCC) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NZ_CP009273 | 542,245 | 0 | T | G | 54.5% | 3.9 / 12.5 | 11 | M37R (ATG→AGG) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 585,390 | 0 | T | G | 54.5% | 0.7 / 12.9 | 11 | T341P (ACC→CCC) | nfrA | bacteriophage adsorption protein NfrA |
| * | NZ_CP009273 | 4,492,581 | 0 | A | C | 54.2% | 7.7 / 28.7 | 24 | L229R (CTG→CGG) | insG | IS4‑like element IS4 family transposase |
| * | NZ_CP009273 | 17,050 | 0 | A | C | 53.8% | 10.0 / 17.0 | 13 | intergenic (‑147/‑439) | mokC/nhaA | type I toxin‑antitoxin system toxin MokC/Na+/H+ antiporter NhaA |
| * | NZ_CP009273 | 3,199,811 | 0 | C | A | 53.8% | 2.5 / 18.6 | 13 | intergenic (‑196/‑11) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 4,265,887 | 0 | T | G | 53.8% | 11.3 / 16.7 | 13 | S163R (AGT→AGG) | pdeC | c‑di‑GMP phosphodiesterase PdeC |
| * | NZ_CP009273 | 2,667,520 | 0 | A | C | 53.3% | 8.1 / 16.5 | 15 | G176G (GGT→GGG) | yphB | aldose 1‑epimerase |
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 52.6% | 18.4 / 25.2 | 19 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| * | NZ_CP009273 | 3,549,559 | 0 | G | A | 47.4% | 8.7 / 10.2 | 19 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 45.2% | 21.6 / 19.4 | 31 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |