breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	4,594,161	0	C	T	60.7%	‑4.7 / 24.9	28	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional activator BglJ
*	NZ_CP009273	1,770,507	0	G	T	58.3%	9.6 / 18.7	12	V222L (GTG→TTG)	ydiF	acyl CoA:acetate/3‑ketoacid CoA transferase
*	NZ_CP009273	3,199,811	0	C	A	55.6%	1.0 / 11.9	9	intergenic (‑196/‑11)	ttdR/ttdA	DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha
*	NZ_CP009273	797,567	0	G	T	54.5%	9.0 / 16.8	11	A75A (GCG→GCT)	ybhI	anion permease
*	NZ_CP009273	1,906,011	0	T	G	54.5%	16.1 / 28.0	22	T275P (ACC→CCC)	htpX	protease HtpX
*	NZ_CP009273	2,473,862	0	T	C	54.5%	2.7 / 10.5	11	P394P (CCT→CCC)	dsdA	D‑serine ammonia‑lyase
*	NZ_CP009273	3,531,777	0	T	G	54.5%	7.7 / 10.8	11	V345G (GTC→GGC)	yhgF	Tex family protein
*	NZ_CP009273	172,755	0	A	G	53.8%	5.9 / 14.6	13	T388A (ACG→GCG)	clcA	H(+)/Cl(‑) exchange transporter ClcA
*	NZ_CP009273	4,594,167	0	C	T	53.6%	8.9 / 32.4	28	S64F (TCT→TTT)	bglJ	DNA‑binding transcriptional activator BglJ
*	NZ_CP009273	3,953,261	0	T	G	53.3%	5.7 / 16.0	15	intergenic (‑88/+111)	ppiC/BW25113_RS25790	peptidylprolyl isomerase PpiC/type II toxin‑antitoxin system PemK/MazF family toxin
*	NZ_CP009273	4,036,353	0	C	T	53.3%	5.7 / 17.4	15	F193F (TTC→TTT)	srkA	stress response kinase SrkA
*	NZ_CP009273	3,659,058	0	T	C	52.6%	18.2 / 26.9	19	D38G (GAT→GGT)	gadX	acid resistance transcriptional activator GadX
*	NZ_CP009273	1,927,661	0	A	T	50.0%	23.4 / 21.9	32	S401T (TCA→ACA)	edd	phosphogluconate dehydratase
*	NZ_CP009273	3,502,021	0	T	A	47.8%	18.5 / 15.0	23	E384D (GAA→GAT)	yhfW	phosphopentomutase
*	NZ_CP009273	3,087,995	1	.	G	26.7%	25.0 / 13.6	15	coding (445/981 nt)	yggR	type IV pilus twitching motility protein PilT