mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 760,187 | 0 | G | C | 57.1% | 6.7 / 18.4 | 14 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 2,845,013 | 0 | T | G | 57.1% | 5.5 / 13.2 | 15 | G218G (GGT→GGG) | hypB | hydrogenase nickel incorporation protein HypB |
| * | NZ_CP009273 | 3,012,931 | 0 | A | C | 56.2% | 3.5 / 17.1 | 16 | T138P (ACA→CCA) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 2,319,929 | 0 | T | G | 53.8% | 9.6 / 16.1 | 13 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NZ_CP009273 | 4,455,604 | 0 | G | A | 53.8% | ‑2.1 / 11.4 | 13 | R132C (CGC→TGC) | treB | PTS trehalose transporter subunit IIBC |
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 52.9% | 5.6 / 21.0 | 17 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 356,342 | 0 | A | C | 52.6% | 15.7 / 26.9 | 19 | S214R (AGC→CGC) | cynX | cyanate transporter CynX |
| * | NZ_CP009273 | 3,012,922 | 0 | T | G | 52.6% | 18.6 / 23.9 | 19 | S135A (TCG→GCG) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 3,634,341 | 0 | C | T | 52.6% | 11.4 / 26.0 | 19 | F40F (TTC→TTT) | dtpB | dipeptide/tripeptide permease DtpB |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 52.0% | 6.1 / 31.3 | 25 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 48.0% | 10.3 / 15.8 | 25 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,992,505 | 0 | T | A | 44.4% | 26.3 / 11.6 | 28 | I388N (ATC→AAC) | uvrD | DNA helicase II |
| * | NZ_CP009273 | 3,992,510 | 0 | G | A | 43.3% | 25.6 / 19.6 | 30 | D390N (GAT→AAT) | uvrD | DNA helicase II |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 37.8% | 55.9 / 12.2 | 37 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 49,765 | 0 | C | T | 37.0% | 20.8 / 27.8 | 27 | intergenic (+134/‑58) | kefC/folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| * | NZ_CP009273 | 49,791 | 0 | G | A | 31.8% | 24.0 / 17.2 | 22 | intergenic (+160/‑32) | kefC/folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| * | NZ_CP009273 | 520,722 | 0 | T | G | 30.3% | 53.5 / 10.0 | 33 | V669G (GTA→GGA) | rhsD | rhs element protein RhsD |
| * | NZ_CP009273 | 3,754,231 | 0 | G | T | 28.6% | 78.5 / 26.5 | 35 | R127S (CGC→AGC) | selA | L‑seryl‑tRNA(Sec) selenium transferase |