mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 172 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 799,325 | 0 | G | T | 66.7% | ‑3.7 / 18.2 | 18 | V123L (GTG→TTG) | ybhJ | hydratase |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 56.7% | 29.9 / 37.5 | 30 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 2,360,810 | 0 | A | G | 55.6% | 14.1 / 23.5 | 18 | G87G (GGA→GGG) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 55.0% | 8.1 / 24.7 | 20 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 55.0% | 1.5 / 24.3 | 20 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 54.5% | 6.1 / 28.3 | 22 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 2,436,061 | 0 | T | G | 54.3% | 41.9 / 49.8 | 35 | G273G (GGT→GGG) | mnmC | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
| * | NZ_CP009273 | 1,350,458 | 0 | T | G | 53.8% | 9.8 / 17.2 | 13 | T304P (ACC→CCC) | sapA | peptide ABC transporter substrate‑binding protein SapA |
| * | NZ_CP009273 | 1,018,373 | 0 | C | G | 52.9% | 14.2 / 24.0 | 17 | A326P (GCA→CCA) | yccS | YccS family putative transporter |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 52.9% | ‑3.4 / 17.9 | 17 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 52.6% | 18.1 / 28.6 | 19 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 2,778,686 | 0 | T | G | 52.5% | 72.3 / 90.9 | 59 | intergenic (‑316/+435) | BW25113_RS25705/BW25113_RS13825 | DUF5507 domain‑containing protein/tRNA‑Ile |
| * | NZ_CP009273 | 1,213,847 | 0 | G | T | 52.2% | 30.7 / 44.6 | 23 | C355F (TGT→TTT) | pdeG | cyclic diguanylate phosphodiesterase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 51.8% | 15.3 / 68.1 | 54 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 51.8% | 23.5 / 70.4 | 54 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 51.8% | 33.3 / 77.3 | 56 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 51.4% | 23.2 / 57.6 | 35 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 4,058,958 | 0 | G | A | 48.9% | 35.5 / 34.1 | 47 | L57L (CTG→TTG) | yihO | MFS transporter |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 48.7% | 129.1 / 63.8 | 113 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 2,216,130 | 0 | G | T | 48.5% | 31.0 / 11.6 | 33 | C156F (TGT→TTT) | dld | D‑lactate dehydrogenase |