mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,791 | G→A | intergenic (+160/‑32) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| RA | 226,010 | (A)6→5 | coding (357/804 nt) | dkgB → | 2,5‑didehydrogluconate reductase DkgB |
| RA | 859,587 | G→A | A164T (GCA→ACA) | fsa → | fructose‑6‑phosphate aldolase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,631,337 | G→A | W112* (TGG→TGA) | pitA → | inorganic phosphate transporter PitA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357574 | 594 | 3 [0] | [2] 4 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 671830 | 679000 | 7171 | 26 [0] | [2] 3 | [ybeQ]–[rihA] | [ybeQ],ybeR,djlB,ybeT,ybeU,djlC,hscC,[rihA] |
| * | * | ÷ | NZ_CP009273 | 679028 | 679217 | 190 | 3 [2] | [2] 4 | rihA | pyrimidine‑specific ribonucleoside hydrolase RihA |
| * | * | ÷ | NZ_CP009273 | 679276 | 680302 | 1027 | 4 [2] | [2] 4 | [rihA]–[gltL] | [rihA],[gltL] |
| * | * | ÷ | NZ_CP009273 | 680351 | 684425–683302 | 2952–4075 | 3 [2] | [2] 4 | [gltL]–[BW25113_RS03405] | [gltL],gltK,gltJ,gltI,[BW25113_RS03405] |
| * | * | ÷ | NZ_CP009273 | 903011 | 903042 | 32 | 3 [1] | [2] 3 | ybjT | SDR family oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1428003–1428248 | 1428279–1428255 | 8–277 | 3 [2] | [2] 3 | [ydfK] | [ydfK] |
| * | * | ÷ | NZ_CP009273 | 1783647 | 1783663 | 17 | 3 [2] | [2] 5 | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| * | * | ÷ | NZ_CP009273 | 1973023 | 1973033 | 11 | 4 [1] | [2] 3 | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 26 (0.900) | 16/164 | 0.5 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 671829 | 0 (0.000) | coding (175/978 nt) | ybeQ | SEL1‑like repeat protein | |||||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 28 (0.960) | 19/164 | 0.3 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1089701 = | NA (NA) | 16 (0.550) | 14/164 | 0.6 | 84.2% | intergenic (+11/+30) | dgcT/BW25113_RS05345 | GGDEF domain‑containing protein/IS3‑like element IS3 family transposase |
| ? | NZ_CP009273 | 1417789 = | 3 (0.100) | coding (68/120 nt) | BW25113_RS26130 | hypothetical protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 35 (1.210) | 5 (0.210) | 5/132 | 1.5 | 21.2% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 9 (0.380) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 20 (0.700) | 12/162 | 0.7 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1417793 | 7 (0.240) | 23 (0.820) | 20/158 | 0.2 | 77.3% | coding (64/120 nt) | BW25113_RS26130 | hypothetical protein |
| ? | NZ_CP009273 | 2163654 = | NA (NA) | intergenic (‑4/‑63) | BW25113_RS10890/BW25113_RS10900 | DeoR/GlpR family DNA‑binding transcription regulator/IS3‑like element IS3 family transposase | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 31 (1.070) | 18/164 | 0.3 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 4532499 = | 0 (0.000) | 17 (0.660) | 13/146 | 0.5 | 69.4% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 15 (0.580) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 0 (0.000) | 10 (0.390) | 8/146 | 1.1 | 57.1% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 15 (0.580) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||