mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 899,438 | 0 | A | C | 73.7% | ‑2.5 / 10.8 | 19 | G162G (GGT→GGG) | ybjP | lipoprotein |
| * | NZ_CP009273 | 2,145,073 | 0 | G | T | 63.6% | ‑4.7 / 11.7 | 11 | L136F (TTG→TTT) | yegJ | DUF2314 domain‑containing protein |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 59.1% | 13.0 / 16.6 | 22 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 1,673,569 | 0 | A | C | 57.9% | 16.2 / 23.5 | 19 | T296P (ACC→CCC) | ydgH | DUF1471 family protein YdgH |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 57.9% | 14.4 / 24.5 | 19 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 333,780 | 0 | A | G | 57.1% | 6.7 / 13.6 | 14 | D431G (GAT→GGT) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 2,141,811 | 0 | T | G | 57.1% | 9.1 / 15.6 | 14 | G219G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 6,981 | 0 | A | G | 55.0% | 5.2 / 14.9 | 20 | Y327H (TAC→CAC) | yaaJ | sodium:alanine symporter family protein |
| * | NZ_CP009273 | 832,212 | 0 | T | G | 54.5% | 15.5 / 24.7 | 22 | F136V (TTT→GTT) | hcxB | hydroxycarboxylate dehydrogenase HcXB |
| * | NZ_CP009273 | 2,380,357 | 0 | A | T | 54.5% | 3.5 / 13.6 | 11 | intergenic (+47/‑56) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 726,200 | 0 | A | C | 54.2% | 18.3 / 25.3 | 24 | T388P (ACC→CCC) | rhsC | rhs element protein RhsC |
| * | NZ_CP009273 | 1,995,399 | 0 | A | C | 53.8% | 5.5 / 14.4 | 13 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase sigma factor FliA/H48 family flagellin FliC |
| * | NZ_CP009273 | 2,145,089 | 0 | G | A | 53.8% | ‑1.1 / 15.6 | 13 | E142K (GAA→AAA) | yegJ | DUF2314 domain‑containing protein |
| * | NZ_CP009273 | 2,145,092 | 0 | G | A | 53.8% | 3.0 / 15.6 | 13 | E143K (GAA→AAA) | yegJ | DUF2314 domain‑containing protein |
| * | NZ_CP009273 | 333,785 | 0 | G | T | 53.3% | 14.6 / 27.0 | 15 | V433L (GTG→TTG) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 2,141,808 | 0 | T | G | 53.3% | 15.5 / 18.3 | 15 | G218G (GGT→GGG) | yegD | molecular chaperone |
| * | NZ_CP009273 | 296,422 | 0 | G | C | 52.9% | 12.0 / 26.7 | 17 | P75R (CCG→CGG) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | NZ_CP009273 | 5,159 | 0 | G | A | 52.6% | 7.3 / 24.1 | 19 | intergenic (+139/‑75) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 5,162 | 0 | T | A | 52.6% | 12.8 / 26.5 | 19 | intergenic (+142/‑72) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 832,042 | 0 | C | G | 52.6% | 14.9 / 27.5 | 19 | A79G (GCG→GGG) | hcxB | hydroxycarboxylate dehydrogenase HcXB |