mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 88 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 645,910 | 0 | T | G | 69.0% | 8.9 / 23.6 | 29 | T13P (ACC→CCC) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 1,819,318 | 0 | G | A | 68.4% | ‑5.2 / 14.4 | 19 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 645,914 | 0 | A | G | 64.3% | 12.3 / 23.5 | 29 | T11T (ACT→ACC) ‡ | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 2,356,900 | 0 | T | C | 63.6% | ‑4.1 / 11.8 | 22 | G71G (GGA→GGG) | yfaY | nicotinamide mononucleotide deamidase‑related protein YfaY |
| * | NZ_CP009273 | 1,819,313 | 0 | G | A | 63.2% | ‑5.7 / 14.3 | 19 | intergenic (‑119/+84) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| * | NZ_CP009273 | 2,089,571 | 0 | A | G | 63.2% | 1.6 / 18.7 | 19 | I83V (ATT→GTT) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 645,916 | 0 | T | G | 60.0% | 21.2 / 31.0 | 30 | T11P (ACT→CCT) ‡ | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 59.5% | ‑3.1 / 43.0 | 42 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 645,920 | 0 | A | T | 59.4% | ‑3.4 / 30.4 | 32 | R9R (CGT→CGA) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 2,436,061 | 0 | T | G | 58.8% | 7.6 / 14.3 | 17 | G273G (GGT→GGG) | mnmC | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
| * | NZ_CP009273 | 2,042,217 | 0 | T | C | 58.3% | 9.0 / 12.7 | 12 | S1267P (TCC→CCC) | yeeJ | inverse autotransporter adhesin YeeJ |
| * | NZ_CP009273 | 822,955 | 0 | T | G | 55.6% | 27.2 / 37.6 | 27 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 54.8% | 6.8 / 47.4 | 42 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 54.5% | 20.6 / 43.0 | 33 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 54.5% | 3.8 / 47.2 | 44 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |
| * | NZ_CP009273 | 4,158,353 | 0 | T | G | 53.3% | 11.9 / 15.9 | 15 | noncoding (54/76 nt) | BW25113_RS20595 | tRNA‑Glu |
| * | NZ_CP009273 | 1,548,257 | 0 | T | G | 52.9% | 16.5 / 21.2 | 17 | Y557S (TAC→TCC) | maeA | malate dehydrogenase |
| * | NZ_CP009273 | 2,436,058 | 0 | T | G | 52.9% | 14.4 / 18.1 | 17 | G272G (GGT→GGG) | mnmC | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
| * | NZ_CP009273 | 500,939 | 0 | T | A | 52.4% | 17.7 / 29.9 | 22 | R190R (CGT→CGA) | ushA | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| * | NZ_CP009273 | 3,055,679 | 0 | A | C | 52.2% | 48.1 / 71.9 | 46 | T491P (ACC→CCC) | scpA | methylmalonyl‑CoA mutase |