mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 132 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 822,955 | 0 | T | G | 65.4% | 5.1 / 21.1 | 26 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 595,032 | 0 | T | G | 63.0% | ‑4.1 / 25.6 | 27 | V288G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 595,035 | 0 | T | G | 63.0% | 3.8 / 23.1 | 27 | V289G (GTG→GGG) | cusA | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| * | NZ_CP009273 | 822,963 | 0 | T | G | 62.1% | ‑6.3 / 27.0 | 29 | D492A (GAC→GCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 949,854 | 0 | A | C | 60.0% | 10.9 / 16.2 | 21 | G23G (GGT→GGG) | focA | formate transporter FocA |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 60.0% | ‑0.8 / 19.6 | 26 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 59.1% | 8.8 / 20.8 | 22 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 766,353 | 0 | T | G | 58.3% | 13.4 / 26.8 | 25 | intergenic (+286/‑561) | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| * | NZ_CP009273 | 5,159 | 0 | G | A | 57.1% | 1.5 / 28.2 | 28 | intergenic (+139/‑75) | thrC/yaaX | threonine synthase/DUF2502 domain‑containing protein |
| * | NZ_CP009273 | 822,957 | 0 | A | G | 57.1% | 15.5 / 28.2 | 28 | L494P (CTC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 1,267,278 | 0 | T | G | 55.6% | 16.8 / 23.1 | 18 | T10P (ACC→CCC) | chaA | sodium‑potassium/proton antiporter ChaA |
| * | NZ_CP009273 | 1,267,283 | 0 | A | T | 55.6% | ‑6.4 / 17.2 | 18 | V8E (GTA→GAA) | chaA | sodium‑potassium/proton antiporter ChaA |
| * | NZ_CP009273 | 760,187 | 0 | G | C | 55.2% | 20.9 / 43.3 | 29 | P184P (CCG→CCC) | sucD | succinate‑‑CoA ligase subunit alpha |
| * | NZ_CP009273 | 645,189 | 0 | T | G | 54.5% | 26.0 / 27.6 | 22 | H253P (CAC→CCC) | citE | citrate (pro‑3S)‑lyase subunit beta |
| * | NZ_CP009273 | 1,906,011 | 0 | T | G | 54.3% | 34.1 / 44.1 | 35 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 4,368,619 | 0 | A | C | 54.3% | 31.9 / 50.8 | 35 | V48G (GTA→GGA) | ampC | BlaEC family class C beta‑lactamase |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 53.6% | ‑0.8 / 31.2 | 28 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,254,480 | 0 | A | C | 53.1% | 17.4 / 35.7 | 32 | V137G (GTG→GGG) | fruA | PTS fructose transporter subunit IIBC |
| * | NZ_CP009273 | 2,254,484 | 0 | A | C | 53.1% | 18.8 / 31.7 | 32 | W136G (TGG→GGG) | fruA | PTS fructose transporter subunit IIBC |
| * | NZ_CP009273 | 4,269,384 | 0 | T | G | 52.9% | 12.8 / 19.7 | 17 | G326G (GGT→GGG) | ghxP | guanine/hypoxanthine transporter GhxP |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4059163 = | 79 (1.690) | 3 (0.070) | 3/152 | 3.4 | 4.2% | intergenic (‑37/+6) | yihO/yihP | MFS transporter/MFS transporter |
| ? | NZ_CP009273 | = 4059159 | 66 (1.580) | intergenic (‑33/+10) | yihO/yihP | MFS transporter/MFS transporter | |||||