mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 70.0% | 8.7 / 16.5 | 30 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 64.3% | ‑4.5 / 10.5 | 14 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,357,755 | 0 | A | T | 64.0% | ‑4.3 / 14.0 | 25 | P530P (CCA→CCT) | yhcD | fimbrial biogenesis outer membrane usher protein |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 63.3% | ‑1.6 / 20.0 | 30 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 500,939 | 0 | T | A | 61.9% | 3.6 / 18.0 | 21 | R190R (CGT→CGA) | ushA | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| * | NZ_CP009273 | 1,024,783 | 0 | T | G | 61.5% | 5.8 / 10.4 | 13 | T215P (ACC→CCC) | rlmI | 23S rRNA (cytosine(1962)‑C(5))‑methyltransferase RlmI |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 61.5% | ‑2.5 / 26.8 | 26 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 3,124,771 | 0 | A | C | 60.0% | 11.5 / 14.6 | 15 | pseudogene (997/1065 nt) | yghQ | lipopolysaccharide biosynthesis protein |
| * | NZ_CP009273 | 3,124,773 | 0 | A | C | 60.0% | 8.0 / 13.4 | 15 | pseudogene (995/1065 nt) | yghQ | lipopolysaccharide biosynthesis protein |
| * | NZ_CP009273 | 3,124,789 | 0 | G | A | 58.8% | 1.3 / 13.2 | 17 | pseudogene (979/1065 nt) | yghQ | lipopolysaccharide biosynthesis protein |
| * | NZ_CP009273 | 3,124,793 | 0 | A | C | 58.8% | 13.3 / 18.8 | 17 | pseudogene (975/1065 nt) | yghQ | lipopolysaccharide biosynthesis protein |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 58.3% | 4.1 / 10.4 | 12 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 4,091,435 | 0 | T | G | 57.9% | 14.3 / 19.7 | 19 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 3,679,399 | 0 | G | T | 57.1% | 4.9 / 14.8 | 14 | N1045K (AAC→AAA) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 2,367,400 | 0 | A | C | 56.5% | 17.0 / 24.5 | 23 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑‑CoA ligase |
| * | NZ_CP009273 | 228,191 | 0 | A | G | 56.2% | 6.3 / 17.2 | 16 | S195G (AGC→GGC) | yafD | endonuclease/exonuclease/phosphatase family protein |
| * | NZ_CP009273 | 3,806,432 | 0 | A | C | 56.2% | 13.8 / 19.2 | 16 | T114T (ACA→ACC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 949,854 | 0 | A | C | 55.6% | 5.8 / 11.7 | 18 | G23G (GGT→GGG) | focA | formate transporter FocA |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 55.6% | 16.5 / 25.4 | 27 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 1,615,375 | 0 | A | C | 54.5% | 3.0 / 11.5 | 11 | V7G (GTG→GGG) | eamA | O‑acetylserine/cysteine exporter |