mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 62.2% | ‑0.6 / 30.2 | 37 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 62.2% | ‑3.1 / 29.9 | 37 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 61.5% | 4.9 / 11.0 | 13 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 61.5% | 3.2 / 11.1 | 13 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| * | NZ_CP009273 | 349,999 | 0 | T | G | 60.0% | 0.6 / 12.8 | 15 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NZ_CP009273 | 2,089,567 | 0 | T | G | 60.0% | 8.2 / 13.6 | 15 | G81G (GGT→GGG) | hisF | imidazole glycerol phosphate synthase subunit HisF |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 58.3% | 3.7 / 11.8 | 12 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 3,569,307 | 0 | A | C | 57.9% | 18.0 / 21.0 | 19 | V372G (GTT→GGT) | gntU | gluconate transporter |
| * | NZ_CP009273 | 2,247,849 | 0 | T | G | 56.2% | 14.5 / 17.4 | 16 | T273P (ACC→CCC) | rihB | ribosylpyrimidine nucleosidase |
| * | NZ_CP009273 | 3,648,637 | 0 | A | C | 56.2% | 8.5 / 14.6 | 16 | V209G (GTG→GGG) | yhiD | MgtC/SapB family protein |
| * | NZ_CP009273 | 4,485,443 | 0 | A | C | 56.0% | 17.6 / 24.9 | 25 | V195G (GTG→GGG) | ahr | NADPH‑dependent aldehyde reductase Ahr |
| * | NZ_CP009273 | 2,574,833 | 0 | T | G | 55.0% | 23.9 / 27.0 | 20 | G613G (GGT→GGG) | tkt | transketolase |
| * | NZ_CP009273 | 1,679,006 | 0 | A | C | 54.5% | 3.7 / 12.4 | 11 | D164A (GAC→GCC) | tus | DNA replication terminus site‑binding protein |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 54.5% | 4.9 / 12.3 | 11 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 33,456 | 0 | C | A | 53.8% | 2.7 / 12.9 | 13 | T880T (ACC→ACA) | carB | carbamoyl‑phosphate synthase large subunit |
| * | NZ_CP009273 | 296,402 | 0 | T | G | 53.8% | 8.2 / 13.1 | 13 | T82P (ACC→CCC) | paoC | aldehyde oxidoreductase molybdenum‑binding subunit PaoC |
| * | NZ_CP009273 | 2,255,725 | 0 | A | C | 53.8% | 6.0 / 15.4 | 13 | G40G (GGT→GGG) | fruK | 1‑phosphofructokinase |
| * | NZ_CP009273 | 3,594,920 | 0 | A | C | 53.8% | 12.8 / 16.1 | 13 | V176G (GTG→GGG) | ftsX | permease‑like cell division protein FtsX |
| * | NZ_CP009273 | 4,091,435 | 0 | T | G | 53.8% | 11.4 / 13.5 | 13 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| * | NZ_CP009273 | 4,607,212 | 0 | A | C | 53.8% | 13.0 / 16.7 | 13 | T25P (ACC→CCC) | deoC | deoxyribose‑phosphate aldolase |