mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.1% | 39.0 / 40.3 | 42 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,229,322 | 0 | C | G | 28.0% | 42.1 / 18.0 | 25 | intergenic (+257/+116) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | NC_000913 | 2,229,323 | 0 | C | G | 28.0% | 45.1 / 17.9 | 25 | intergenic (+258/+115) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | NC_000913 | 292,302 | 0 | C | G | 24.0% | 42.3 / 14.5 | 25 | intergenic (+71/+20) | yagJ/yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| * | NC_000913 | 164,454 | 0 | A | C | 20.8% | 47.9 / 10.4 | 24 | K784Q (AAA→CAA) | hrpB | putative ATP‑dependent helicase |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 6 (0.200) | 6/260 | 2.4 | 10.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3906171 | 53 (1.800) | coding (397/837 nt) | bglG | transcriptional antiterminator of the bgl operon | |||||
| * | ? | NC_000913 | = 4265906 | 21 (0.710) | 5 (0.180) | 5/248 | 2.6 | 19.6% | coding (125/1080 nt) | alr | alanine racemase, biosynthetic, PLP‑binding |
| ? | NC_000913 | = 4265911 | 21 (0.750) | coding (130/1080 nt) | alr | alanine racemase, biosynthetic, PLP‑binding | |||||
| * | ? | NC_000913 | 3897448 = | 39 (1.320) | 4 (0.140) | 4/244 | 2.8 | 8.2% | intergenic (+9/‑58) | yieH/cbrB | phosphoenolpyruvate and 6‑phosphogluconate phosphatase/PRK09823 family inner membrane protein, creBC regulon |
| ? | NC_000913 | 3897501 = | 53 (1.920) | intergenic (+62/‑5) | yieH/cbrB | phosphoenolpyruvate and 6‑phosphogluconate phosphatase/PRK09823 family inner membrane protein, creBC regulon | |||||
| * | ? | NC_000913 | = 2893945 | 20 (0.680) | 4 (0.140) | 4/244 | 2.8 | 16.8% | coding (27/261 nt) | ygcO | putative 4Fe‑4S cluster‑containing protein |
| ? | NC_000913 | = 2893986 | 21 (0.760) | coding (68/261 nt) | ygcO | putative 4Fe‑4S cluster‑containing protein | |||||
| * | ? | NC_000913 | 2775087 = | 59 (2.000) | 4 (0.150) | 4/238 | 2.8 | 7.1% | intergenic (+66/‑458) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | 2775134 = | 50 (1.850) | intergenic (+113/‑411) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3676971 = | 28 (0.950) | 4 (0.140) | 4/246 | 2.9 | 13.5% | coding (1380/2061 nt) | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | 3677025 = | 25 (0.900) | coding (1326/2061 nt) | yhjG | putative inner membrane‑anchored periplasmic AsmA family protein | |||||
| * | ? | NC_000913 | = 3269728 | 65 (2.200) | 4 (0.140) | 4/246 | 2.9 | 5.9% | noncoding (7/98 nt) | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3269739 | 67 (2.400) | noncoding (18/98 nt) | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 2487477 = | 34 (1.150) | 4 (0.140) | 4/252 | 2.9 | 10.8% | coding (3104/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| ? | NC_000913 | 2487488 = | 33 (1.150) | coding (3115/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA | |||||
| * | ? | NC_000913 | = 2331370 | 33 (1.120) | 4 (0.140) | 4/246 | 2.9 | 10.9% | pseudogene (3033/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | = 2331375 | 34 (1.220) | pseudogene (3028/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| * | ? | NC_000913 | 1624572 = | 48 (1.630) | 4 (0.140) | 4/252 | 2.9 | 8.0% | intergenic (‑75/‑201) | ydeI/ydeJ | hydrogen peroxide resistance OB fold protein; putative periplasmic protein/inactive PncC family protein |
| ? | NC_000913 | 1624591 = | 46 (1.610) | intergenic (‑94/‑182) | ydeI/ydeJ | hydrogen peroxide resistance OB fold protein; putative periplasmic protein/inactive PncC family protein | |||||