mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.6% | 36.5 / 16.5 | 27 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,959,480 | 0 | A | T | 23.1% | 43.6 / 12.0 | 26 | intergenic (+35/+52) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| * | NC_000913 | 3,959,481 | 0 | C | G | 23.1% | 52.8 / 14.1 | 26 | intergenic (+36/+51) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| * | NC_000913 | 1,121,223 | 1 | . | A | 20.0% | 45.7 / 12.6 | 20 | intergenic (‑268/+19) | bssS/dinI | biofilm regulator/DNA damage‑inducible protein I |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 366083 = | 30 (1.080) | 5 (0.180) | 5/260 | 2.7 | 14.4% | coding (223/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | 366123 = | 30 (1.110) | coding (183/3075 nt) | lacZ | beta‑D‑galactosidase | |||||
| * | ? | NC_000913 | 4576863 = | 45 (1.620) | 4 (0.160) | 4/246 | 2.9 | 8.8% | intergenic (+8/+49) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| ? | NC_000913 | 4576890 = | 41 (1.600) | intergenic (+35/+22) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC | |||||
| * | ? | NC_000913 | = 4550483 | 26 (0.940) | 4 (0.160) | 4/244 | 2.9 | 17.1% | coding (814/1344 nt) | gntP | fructuronate transporter |
| ? | NC_000913 | = 4550562 | 15 (0.590) | coding (735/1344 nt) | gntP | fructuronate transporter | |||||
| * | ? | NC_000913 | 3028494 = | 20 (0.720) | 4 (0.150) | 4/248 | 2.9 | 17.2% | intergenic (+6/+30) | ghxQ/ygfS | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative 4Fe‑4S ferredoxin‑type oxidoreductase subunit |
| ? | NC_000913 | 3028518 = | 20 (0.770) | intergenic (+30/+6) | ghxQ/ygfS | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative 4Fe‑4S ferredoxin‑type oxidoreductase subunit | |||||
| * | ? | NC_000913 | = 189788 | 31 (1.120) | 4 (0.150) | 4/250 | 2.9 | 12.5% | noncoding (77/136 nt) | tff | novel sRNA, function unknown |
| ? | NC_000913 | = 189828 | 27 (1.030) | noncoding (117/136 nt) | tff | novel sRNA, function unknown | |||||
| * | ? | NC_000913 | 3982351 = | 16 (0.580) | 4 (0.150) | 4/254 | 3.0 | 18.9% | intergenic (+79/‑24) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg |
| ? | NC_000913 | 3982397 = | 19 (0.720) | noncoding (23/77 nt) | argX | tRNA‑Arg | |||||
| * | ? | NC_000913 | 3808939 = | 28 (1.010) | 4 (0.150) | 4/258 | 3.0 | 12.5% | coding (400/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| ? | NC_000913 | 3809033 = | 29 (1.080) | coding (494/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) | |||||
| * | ? | NC_000913 | 3595984 = | 35 (1.260) | 4 (0.150) | 4/252 | 3.0 | 12.5% | coding (420/927 nt) | livH | branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 | 3596035 = | 23 (0.870) | coding (369/927 nt) | livH | branched‑chain amino acid ABC transporter permease | |||||
| * | ? | NC_000913 | = 3134555 | 28 (1.010) | 4 (0.150) | 4/254 | 3.0 | 13.2% | coding (425/693 nt) | yghT | putative ATP‑binding protein |
| ? | NC_000913 | = 3134592 | 26 (0.980) | coding (462/693 nt) | yghT | putative ATP‑binding protein | |||||
| * | ? | NC_000913 | = 2179519 | 29 (1.040) | 4 (0.150) | 4/252 | 3.0 | 11.9% | coding (699/1278 nt) | yegT | nucleoside transporter, low affinity |
| ? | NC_000913 | = 2179534 | 32 (1.220) | coding (714/1278 nt) | yegT | nucleoside transporter, low affinity | |||||