mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 42.0% | 43.2 / 89.3 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 3,270,030 | 0 | T | C | 34.8% | 25.4 / 19.6 | 24 | intergenic (+428/+186) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| * | U00096 | 2,947,591 | 0 | A | . | 25.9% | 68.4 / 22.1 | 27 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | U00096 | 3,269,956 | 0 | T | C | 25.6% | 68.0 / 28.7 | 47 | intergenic (+354/+260) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| * | U00096 | 1,537,970 | 0 | T | A | 24.0% | 158.3 / 29.3 | 75 | Q295L (CAG→CTG) ‡ | narY | nitrate reductase Z subunit beta |
| * | U00096 | 2,947,467 | 0 | A | C | 23.5% | 73.1 / 17.2 | 34 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 422,435 | 0 | T | G | 23.3% | 213.6 / 13.6 | 87 | intergenic (+76/‑83) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 1,537,949 | 0 | G | A | 22.8% | 170.5 / 30.7 | 79 | P302L (CCA→CTA) | narY | nitrate reductase Z subunit beta |
| * | U00096 | 1,287,009 | 0 | A | T | 22.5% | 68.2 / 10.2 | 40 | intergenic (+25/+57) | ychS/rttR | putative uncharacterized protein YchS/small RNA RttR |
| * | U00096 | 1,537,973 | 0 | C | A | 22.4% | 185.0 / 31.7 | 76 | R294L (CGC→CTC) ‡ | narY | nitrate reductase Z subunit beta |
| * | U00096 | 1,537,972 | 0 | G | T | 21.6% | 182.1 / 19.3 | 74 | R294R (CGC→CGA) ‡ | narY | nitrate reductase Z subunit beta |
| * | U00096 | 1,537,969 | 0 | C | A | 21.3% | 181.1 / 18.0 | 75 | Q295H (CAG→CAT) ‡ | narY | nitrate reductase Z subunit beta |
| * | U00096 | 1,537,971 | 0 | G | A | 20.5% | 172.4 / 25.0 | 74 | Q295* (CAG→TAG) ‡ | narY | nitrate reductase Z subunit beta |
| * | U00096 | 1,537,981 | 0 | G | A | 20.0% | 183.4 / 21.1 | 76 | L291L (CTC→CTT) | narY | nitrate reductase Z subunit beta |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | = 4542690 | 134 (1.300) | 19 (0.200) | 16/274 | 8.1 | 12.5% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 141 (1.460) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 696863 = | 26 (0.250) | 18 (0.190) +GAAGAAACAATC |
7/268 | 11.7 | 25.9% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 86 (0.830) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | 4542682 = | 137 (1.330) | 9 (0.090) | 7/274 | 11.9 | 6.2% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 142 (1.470) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 2560972 | 51 (0.490) | 4 (0.040) | 4/252 | 13.1 | 9.0% | intergenic (+74/‑396) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| ? | U00096 | 2561043 = | 37 (0.420) | intergenic (+145/‑325) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM | |||||