mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 426,675 | A→C | S280R (AGC→CGC) | tig → | trigger factor |
| JC | 474,234 | Δ4 bp | coding (1069‑1072/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| JC JC | 1,306,035 | IS150 (+) +3 bp | coding (203‑205/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,131,466 | (A)9→8 | intergenic (‑125/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,558,224 | G→A | intergenic (‑49/+69) | yfgK ← / ← yfgL | GTP‑binding protein EngA/protein assembly complex, lipoprotein component |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| RA | 3,928,593 | A→T | N126I (AAC→ATC) | rho → | transcription termination factor Rho |
| RA | 4,108,495 | T→G | E3A (GAA→GCA) | metJ ← | transcriptional repressor protein MetJ |
| RA | 4,138,988 | C→T | A213V (GCG→GTG) | oxyR → | DNA‑binding transcriptional dual regulator |
| RA | 4,164,097 | C→T | P1081L (CCG→CTG) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3895000 | 3901930 | 6931 | 13 [0] | [0] 56 | rbsD–[yieO] | rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 1884735 = | 38 (0.700) | 122 (2.280) | 74/148 | 0.0 | 74.7% | coding (469/567 nt) | yebN | conserved inner membrane protein |
| ? | REL606 | = 1889406 | 45 (0.840) | coding (554/1374 nt) | yebQ | predicted transporter | |||||
| * | ? | REL606 | = 3652533 | NA (NA) | 54 (1.020) | 43/146 | 0.2 | 100% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901931 = | 0 (0.000) | coding (489/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||