breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence seq id position mutation freq annotation gene description
RA BX571857 431,505 T→C 8.5% S77P (TCA→CCA)  SAS0387 → exotoxin
RA BX571857 605,238 T→C 5.0% S1034S (AGT→AGC SAS0521 → bone sialoprotein‑binding protein
RA BX571857 605,265 T→C 5.8% D1043D (GAT→GAC SAS0521 → bone sialoprotein‑binding protein
RA BX571857 1,252,438 T→C 100% intergenic (+358/‑77) SAS1171 → / → SAS1172 signal recognition particle protein/30S ribosomal protein S16
RA BX571857 1,868,342 G→A 100% G129D (GGT→GAT)  SAS1720 → putative membrane protein
RA BX571857 1,914,095 G→A 64.3% V11I (GTA→ATA)  SAS1762 → putative peptidyl‑prolyl cis‑isomerase
RA BX571857 1,923,186 C→A 9.8% A29S (GCG→TCG)  SAS1768 ← putative DNA‑binding protein
RA BX571857 2,474,326 G→A 31.8% L64L (CTA→TTA)  SAS2313 ← putative membrane protein
RA BX571857 2,667,682 G→C 5.5% intergenic (‑13/‑239) SAS2489 ← / → SAS2490 putative aminotransferase/putative membrane protein
RA BX571857 2,701,801 C→A 24.5% D223Y (GAT→TAT)  SAS2516 ← fibrinogen and keratin‑10 binding surface anchored protein
RA BX571857 2,778,123 C→T 6.3% A1049T (GCA→ACA)  SAS2578 ← collagen adhesin precursor
RA BX571858 20,628:1 +G 100% coding (288/306 nt) pSAS24 → putative exported protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ BX571858 20652 20652 1 699 [0] [0] NA pSAS24/– putative exported protein/–

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? BX571857 980997 =NA (NA)23 (0.160) 20/118 NT NA noncoding (1/27 nt) Repeat flanking prophage phiSa4(476) Repeat flanking prophage phiSa4(476)
?BX571857 = 1025750 NA (NA)intergenic (+519/‑57) SAS0954/SAS0955 amidase/putative protease
* ? BX571858 1 =0 (0.000)624 (1.220) 147/170 NT 100% intergenic (–/‑11) –/pSAS01 –/putative ABC transporter ATP binding protein
?BX571858 = 20651 0 (0.000)intergenic (+5/–) pSAS24/– putative exported protein/–