mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.1% | 46.7 / 40.0 | 57 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,361,535 | 0 | A | T | 27.9% | 62.8 / 10.1 | 44 | I226N (ATC→AAC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1292389 = | 46 (0.960) | 5 (0.110) | 5/264 | 6.0 | 10.4% | intergenic (+24/+120) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| ? | NC_000913 | 1292417 = | 43 (0.960) | intergenic (+52/+92) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS | |||||
| * | ? | NC_000913 | 1428170 = | 36 (0.750) | 4 (0.090) | 4/268 | 6.6 | 10.8% | noncoding (625/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428204 = | 32 (0.700) | noncoding (591/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1396661 | NA (NA) | 4 (0.090) | 4/268 | 6.6 | 11.0% | noncoding (618/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428197 = | 34 (0.710) | noncoding (598/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1396634 | NA (NA) | 4 (0.090) | 4/268 | 6.6 | 10.5% | noncoding (591/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428170 = | 36 (0.750) | noncoding (625/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 4 (0.090) | 4/268 | 6.6 | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 732888 = | 34 (0.710) | 4 (0.090) | 4/274 | 6.7 | 10.5% | coding (3306/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 734728 = | 35 (0.750) | pseudogene (596/1521 nt) | rhsO | pseudogene, Rhs family | |||||
| * | ? | NC_000913 | 3305904 = | 49 (1.020) | 3 (0.070) | 3/264 | 7.2 | 6.5% | intergenic (‑87/+67) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase |
| ? | NC_000913 | 3305929 = | 41 (0.910) | intergenic (‑112/+42) | mtr/deaD | tryptophan transporter of high affinity/ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2144164 | 42 (0.880) | 4 (0.090) | 3/264 | 7.2 | 9.2% | coding (899/3318 nt) | yegE | putative diguanylate cyclase |
| ? | NC_000913 | = 2144173 | 40 (0.890) | coding (908/3318 nt) | yegE | putative diguanylate cyclase | |||||
| * | ? | NC_000913 | 1939099 = | NA (NA) | 3 (0.070) | 3/266 | 7.2 | NA | noncoding (1/30 nt) | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1939129 = | NA (NA) | intergenic (+38/+93) | pykA/lpxM | pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | NC_000913 | 1226106 = | 53 (1.110) | 4 (0.090) | 3/266 | 7.2 | 7.8% | intergenic (‑26/‑494) | minC/ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| ? | NC_000913 | 1226128 = | 45 (1.000) | intergenic (‑48/‑472) | minC/ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein | |||||