mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,365,454 | 0 | A | C | 21.9% | 109.7 / 24.9 | 64 | intergenic (‑97/+19) | cutA/dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| Marginal new junction evidence (lowest skew 10 of 66 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1413963 | 77 (1.340) | 7 (0.130) | 7/264 | 6.4 | 8.9% | intergenic (‑36/+21) | ralR/recT | Rac prophage, restriction alleviation protein/Rac prophage, recombination and repair protein |
| ? | NC_000913 | = 1413968 | 71 (1.310) | intergenic (‑41/+16) | ralR/recT | Rac prophage, restriction alleviation protein/Rac prophage, recombination and repair protein | |||||
| * | ? | NC_000913 | = 1207805 | 44 (0.760) | 6 (0.120) | 6/248 | 6.6 | 11.1% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 57 (1.120) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 48 (0.830) | 8 (0.160) | 5/248 | 7.1 | 13.9% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 57 (1.120) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2411399 = | 71 (1.230) | 7 (0.130) | 5/266 | 7.6 | 9.7% | intergenic (‑49/+38) | yfbS/yfbT | putative transporter/sugar phosphatas |
| ? | NC_000913 | 2411419 = | 63 (1.150) | intergenic (‑69/+18) | yfbS/yfbT | putative transporter/sugar phosphatas | |||||
| * | ? | NC_000913 | = 4315808 | 42 (0.730) | 5 (0.090) | 5/270 | 7.7 | 11.1% | coding (276/558 nt) | phnN | ribose 1,5‑bisphosphokinase |
| ? | NC_000913 | = 4315818 | 40 (0.720) | coding (266/558 nt) | phnN | ribose 1,5‑bisphosphokinase | |||||
| * | ? | NC_000913 | = 2345619 | 55 (0.960) | 5 (0.090) | 5/270 | 7.7 | 8.3% | coding (757/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| ? | NC_000913 | = 2345623 | 57 (1.030) | coding (761/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit | |||||
| * | ? | NC_000913 | 3852833 = | 59 (1.030) | 4 (0.080) | 4/258 | 8.0 | 7.2% | intergenic (‑50/+56) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | 3852866 = | 49 (0.920) | intergenic (‑83/+23) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | 4363385 = | 47 (0.820) | 4 (0.070) | 4/264 | 8.1 | 7.1% | coding (1659/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC |
| ? | NC_000913 | 4363423 = | 60 (1.110) | coding (1621/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC | |||||
| * | ? | NC_000913 | 1429011 = | 74 (1.290) | 4 (0.070) | 4/264 | 8.1 | 5.6% | intergenic (+27/‑38) | lomR/stfR | pseudogene, Rac prophage lom homolog,Phage or Prophage Related, interrupted by IS5 and N‑ter deletion/Rac prophage, putative tail fiber protein |
| ? | NC_000913 | 1429033 = | 66 (1.220) | intergenic (+49/‑16) | lomR/stfR | pseudogene, Rac prophage lom homolog,Phage or Prophage Related, interrupted by IS5 and N‑ter deletion/Rac prophage, putative tail fiber protein | |||||
| * | ? | NC_000913 | 4296206 = | NA (NA) | 5 (0.090) | 4/266 | 8.2 | 34.5% | noncoding (373/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4296286 = | 10 (0.170) | noncoding (453/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||