mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.4% | 60.3 / 56.5 | 74 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 56 (0.860) | 14 (0.240) | 14/252 | 4.2 | 20.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 58 (1.010) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 54 (0.830) | 5 (0.090) | 5/252 | 8.0 | 8.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 58 (1.010) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3515982 = | 71 (1.090) | 4 (0.070) | 4/266 | 9.0 | 5.5% | intergenic (‑69/+38) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| ? | NC_000913 | 3516010 = | 70 (1.150) | intergenic (‑97/+10) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
| * | ? | NC_000913 | = 3384554 | 74 (1.140) | 4 (0.060) | 4/272 | 9.1 | 5.2% | intergenic (‑286/‑149) | mdh/argR | malate dehydrogenase, NAD(P)‑binding/l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
| ? | NC_000913 | = 3384562 | 75 (1.210) | intergenic (‑294/‑141) | mdh/argR | malate dehydrogenase, NAD(P)‑binding/l‑arginine‑responsive arginine metabolism regulon transcriptional regulator | |||||
| * | ? | NC_000913 | = 193453 | 66 (1.020) | 3 (0.050) | 3/264 | 9.6 | 4.9% | intergenic (+24/‑68) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| ? | NC_000913 | = 193478 | 55 (0.910) | intergenic (+49/‑43) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase | |||||
| * | ? | NC_000913 | = 4542690 | 72 (1.110) | 3 (0.050) | 3/266 | 9.7 | 3.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 87 (1.430) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2926901 | 58 (0.890) | 3 (0.050) | 3/270 | 9.8 | 5.2% | coding (594/1365 nt) | ygdH | UPF0717 family protein |
| ? | NC_000913 | = 2926911 | 55 (0.890) | coding (604/1365 nt) | ygdH | UPF0717 family protein | |||||
| * | ? | NC_000913 | 213083 = | 60 (0.920) | 3 (0.050) | 3/276 | 9.9 | 4.9% | coding (753/1299 nt) | tilS | tRNA(Ile)‑lysidine synthetase |
| ? | NC_000913 | 213120 = | 58 (0.920) | coding (790/1299 nt) | tilS | tRNA(Ile)‑lysidine synthetase | |||||
| * | ? | NC_000913 | = 2017028 | 68 (1.050) | 3 (0.050) | 3/280 | 10.0 | 4.5% | coding (475/1374 nt) | fliI | flagellum‑specific ATP synthase |
| ? | NC_000913 | = 2017106 | 61 (0.950) | coding (553/1374 nt) | fliI | flagellum‑specific ATP synthase | |||||
| * | ? | NC_000913 | = 2224021 | 64 (0.990) | 3 (0.050) | 3/282 | 10.1 | 4.9% | coding (850/933 nt) | pbpG | D‑alanyl‑D‑alanine endopeptidase |
| ? | NC_000913 | 2742804 = | 54 (0.840) | coding (422/1227 nt) | yfiN | putative membrane‑anchored diguanylate cyclase | |||||