mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,473,882 | 0 | T | G | 20.9% | 129.6 / 10.4 | 67 | L94R (CTG→CGG) | yfdP | CPS‑53 (KpLE1) prophage, uncharacterized protein |
| Marginal new junction evidence (lowest skew 10 of 76 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542691 | 64 (0.890) | 9 (0.130) | 8/266 | 7.7 | 11.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542987 | 81 (1.210) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 3087878 = | NA (NA) | 7 (0.110) | 7/264 | 8.1 | NA | intergenic (+20/‑404) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | NC_000913 | 3087903 = | NA (NA) | intergenic (+45/‑379) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter | |||||
| * | ? | NC_000913 | 4213167 = | 77 (1.070) | 5 (0.080) | 5/262 | 9.2 | 6.3% | intergenic (+9/‑66) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| ? | NC_000913 | 4213198 = | 78 (1.180) | intergenic (+40/‑35) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 624184 | 75 (1.050) | 5 (0.070) | 5/266 | 9.4 | 6.5% | coding (327/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 624208 | 74 (1.100) | coding (303/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1220759 | 87 (1.210) | 5 (0.070) | 5/272 | 9.5 | 5.7% | pseudogene (1159/2574 nt) | ycgH | pseudogene, putative ATP‑binding component of a transport system |
| ? | NC_000913 | = 1220768 | 83 (1.210) | pseudogene (1168/2574 nt) | ycgH | pseudogene, putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 273987 = | NA (NA) | 6 (0.090) | 5/272 | 9.5 | NA | intergenic (+33/+114) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator |
| ? | NC_000913 | 274057 = | NA (NA) | intergenic (+103/+44) | ykfC/insH1 | CP4‑6 prophage, conserved protein,Phage or Prophage Related/IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 3982691 | 66 (0.920) | 9 (0.160) +28 bp |
3/228 | 9.6 | 13.2% | noncoding (87/87 nt) | leuT | tRNA‑Leu |
| ? | NC_000913 | = 4606402 | 82 (1.140) | noncoding (1/87 nt) | leuQ | tRNA‑Leu | |||||
| * | ? | NC_000913 | 4606079 = | 76 (1.060) | 8 (0.140) +27 bp |
3/230 | 9.7 | 11.1% | intergenic (+38/+1) | yjjZ/leuV | uncharacterized protein/tRNA‑Leu |
| ? | NC_000913 | = 4606402 | 83 (1.160) | noncoding (1/87 nt) | leuQ | tRNA‑Leu | |||||
| * | ? | NC_000913 | = 4040682 | 60 (0.840) | 16 (0.230) | 5/280 | 9.8 | 19.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213161 | 77 (1.090) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 3946823 | 9 (0.130) | 6 (0.080) | 5/280 | 9.8 | 14.8% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913 | = 4040680 | 60 (0.850) | intergenic (+45/+225) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||