mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,361,533 | 0 | A | T | 20.9% | 75.2 / 11.3 | 47 | I226N (ATC→AAC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4295831 = | NA (NA) | 3 (0.080) | 3/206 | 5.8 | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296395 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3946052 | 2 (0.040) | 6 (0.130) | 5/276 | 6.2 | 75.5% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3946068 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 6 (0.130) | 5/276 | 6.2 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 781369 = | 42 (0.850) | 9 (0.190) +GAG |
4/278 | 6.8 | 18.1% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521004 | 41 (0.830) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | = 4185518 | 49 (0.990) | 3 (0.060) | 3/274 | 7.4 | 6.2% | coding (170/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | NC_000913 | = 4185542 | 44 (0.920) | coding (194/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
| * | ? | NC_000913 | = 3915902 | 43 (0.870) | 3 (0.060) | 3/280 | 7.5 | 6.2% | coding (70/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| ? | NC_000913 | = 3915924 | 49 (1.010) | coding (48/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit | |||||
| * | ? | NC_000913 | = 64236 | 47 (0.950) | 3 (0.060) | 3/278 | 7.5 | 5.8% | coding (1545/2352 nt) | polB | DNA polymerase II |
| ? | NC_000913 | = 64259 | 51 (1.060) | coding (1522/2352 nt) | polB | DNA polymerase II | |||||
| * | ? | NC_000913 | 781369 = | 42 (0.850) | 7 (0.140) +G |
3/282 | 7.6 | 14.8% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521126 | 39 (0.790) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||