mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4094681 | NA (NA) | 26 (0.450) +23 bp |
4/238 | 8.6 | NA | noncoding (367/402 nt) | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element, contains 9 REP sequences |
| ? | NC_000913 | 4285323 = | NA (NA) | noncoding (23/77 nt) | REP320 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3877664 | NA (NA) | 4 (0.060) | 4/270 | 9.5 | NA | noncoding (80/98 nt) | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3877675 | NA (NA) | noncoding (91/98 nt) | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 1287084 | 44 (0.640) | 4 (0.070) | 3/244 | 9.5 | 7.9% | noncoding (153/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913 | 1287557 = | 56 (0.950) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | 3150549 = | NA (NA) | 3 (0.050) | 3/262 | 10.0 | NA | intergenic (+5/+267) | yghA/exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | NC_000913 | 3150578 = | NA (NA) | noncoding (27/255 nt) | RIP222 (repetitive extragenic palindromic) element, contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element, contains 5 REP sequences and 2 IHF sites | |||||
| * | ? | NC_000913 | 3948425 = | 151 (2.190) | 3 (0.050) | 3/266 | 10.2 | 2.0% | intergenic (+2/+23) | yifE/yifB | UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator |
| ? | NC_000913 | 3948448 = | 147 (2.280) | coding (1521/1521 nt) | yifB | magnesium chelatase family protein and putative transcriptional regulator | |||||
| * | ? | NC_000913 | 3643086 = | 51 (0.740) | 3 (0.050) | 3/268 | 10.2 | 5.7% | coding (46/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3643106 = | 51 (0.790) | coding (26/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 3227828 | 64 (0.930) | 3 (0.050) | 3/268 | 10.2 | 4.6% | coding (30/1071 nt) | ygjJ | putative periplasmic protein |
| ? | NC_000913 | = 3227833 | 63 (0.970) | coding (35/1071 nt) | ygjJ | putative periplasmic protein | |||||
| * | ? | NC_000913 | = 2476565 | 74 (1.070) | 3 (0.050) | 3/268 | 10.2 | 4.1% | intergenic (+57/‑17) | torI/pawZ | response regulator inhibitor for tor operon/tRNA‑OTHER |
| ? | NC_000913 | = 2476583 | 71 (1.090) | pseudogene (2/15 nt) | pawZ | tRNA‑OTHER | |||||
| * | ? | NC_000913 | = 2034871 | 70 (1.020) | 3 (0.050) | 3/268 | 10.2 | 4.3% | pseudogene (159/531 nt) | yedS | pseudogene, outer membrane protein homology, putative outer membrane protein |
| ? | NC_000913 | = 2034893 | 67 (1.030) | pseudogene (181/531 nt) | yedS | pseudogene, outer membrane protein homology, putative outer membrane protein | |||||
| * | ? | NC_000913 | = 1436228 | 62 (0.900) | 3 (0.050) | 3/268 | 10.2 | 4.9% | coding (666/1134 nt) | ompN | outer membrane pore protein N, non‑specific |
| ? | NC_000913 | = 1436244 | 59 (0.910) | coding (650/1134 nt) | ompN | outer membrane pore protein N, non‑specific | |||||