mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4263934 = | 92 (0.960) | 4 (0.040) | 4/252 | NT | 4.6% | coding (298/984 nt) | qorA | quinone oxidoreductase, NADPH‑dependent |
| ? | NC_000913 | 4263974 = | 78 (0.840) | coding (258/984 nt) | qorA | quinone oxidoreductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | = 3829478 | 287 (2.980) | 6 (0.060) | 5/254 | NT | 2.0% | coding (534/1392 nt) | xanP | xanthine permease |
| ? | NC_000913 | = 3829513 | 302 (3.240) | coding (569/1392 nt) | xanP | xanthine permease | |||||
| * | ? | NC_000913 | 3808009 = | 392 (4.070) | 3 (0.030) | 3/250 | NT | 0.79% | coding (90/1035 nt) | waaQ | lipopolysaccharide core biosynthesis protein |
| ? | NC_000913 | 3808048 = | 379 (4.130) | coding (51/1035 nt) | waaQ | lipopolysaccharide core biosynthesis protein | |||||
| * | ? | NC_000913 | = 3762197 | 320 (3.320) | 3 (0.030) | 3/254 | NT | 0.95% | coding (15/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3762229 | 313 (3.350) | coding (47/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3210131 = | 76 (0.790) | 3 (0.030) | 3/244 | NT | 3.8% | coding (413/1014 nt) | tsaD | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein |
| ? | NC_000913 | 3210172 = | 81 (0.900) | coding (372/1014 nt) | tsaD | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein | |||||
| * | ? | NC_000913 | 2763051 = | 91 (0.950) | 3 (0.030) | 3/246 | NT | 3.5% | coding (490/2190 nt) | yfjK | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| ? | NC_000913 | 2763088 = | 80 (0.890) | coding (453/2190 nt) | yfjK | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage | |||||
| * | ? | NC_000913 | = 2153434 | 105 (1.090) | 4 (0.040) | 4/252 | NT | 3.7% | noncoding (126/143 nt) | sibA | sRNA antisense regulator of toxic IbsA protein |
| ? | NC_000913 | = 2153442 | 107 (1.160) | noncoding (134/143 nt) | sibA | sRNA antisense regulator of toxic IbsA protein | |||||
| * | ? | NC_000913 | = 2002802 | 80 (0.830) | 3 (0.030) | 3/254 | NT | 3.3% | coding (805/1497 nt) | fliC | flagellar filament structural protein (flagellin) |
| ? | NC_000913 | = 2002863 | 99 (1.060) | coding (744/1497 nt) | fliC | flagellar filament structural protein (flagellin) | |||||
| * | ? | NC_000913 | = 1628277 | 95 (0.990) | 2 (0.020) | 4/248 | NT | 2.1% | intergenic (+14/‑75) | ydfG/rspR | NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase/transcriptional repressor for rspAB |
| ? | NC_000913 | = 1628283 | 95 (1.040) | intergenic (+20/‑69) | ydfG/rspR | NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase/transcriptional repressor for rspAB | |||||
| * | ? | NC_000913 | 873817 = | 80 (0.830) | 3 (0.030) | 3/246 | NT | 3.7% | coding (839/2349 nt) | yliE | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | 873859 = | 80 (0.890) | coding (881/2349 nt) | yliE | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||