mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 13,586 | C→A | 5.2% | T475N (ACC→AAC) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 23,255 | G→A | 5.4% | D289N (GAT→AAT) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 27,186 | G→A | 5.1% | V304M (GTG→ATG) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase, 4Fe‑4S protein |
| RA | 53,376 | G→A | 6.7% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 6.5% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 83,587 | A→C | 13.0% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 12.9% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 87,884 | T→A | 5.0% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 164,620 | C→T | 7.0% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 6.1% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 191,720 | G→A | 5.3% | intergenic (+12/‑135) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,728 | T→C | 5.9% | intergenic (+20/‑127) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,729 | G→T | 5.3% | intergenic (+21/‑126) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,730 | A→C | 5.3% | intergenic (+22/‑125) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,731 | G→A | 6.3% | intergenic (+23/‑124) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,739 | T→C | 6.5% | intergenic (+31/‑116) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 210,017 | C→T | 5.6% | I113I (ATC→ATT) | ldcC → | lysine decarboxylase 2, constitutive |
| RA | 256,449 | T→C | 8.3% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 7.1% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 7.3% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 314,255 | T→C | 7.9% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 7.9% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 475,971 | C→G | 6.8% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 6.8% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 569,160 | G→T | 7.1% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 7.0% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 605,022 | C→G | 6.1% | D135H (GAT→CAT) | nfsB ← | dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 605,025 | C→G | 6.2% | D134H (GAT→CAT) | nfsB ← | dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 657,531 | T→G | 9.8% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 9.7% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 9.7% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 659,204 | C→T | 5.2% | intergenic (+54/+47) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,205 | A→T | 5.4% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,206 | A→T | 5.4% | intergenic (+56/+45) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,207 | A→G | 5.4% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 699,556 | C→T | 9.0% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 9.0% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 774,356 | C→G | 5.6% | P16P (CCC→CCG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 774,358 | T→A | 5.6% | L17Q (CTG→CAG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 805,312 | G→T | 8.6% | E604* (GAG→TAG) ‡ | ybhJ → | aconitase family protein |
| RA | 805,313 | A→C | 8.6% | E604A (GAG→GCG) ‡ | ybhJ → | aconitase family protein |
| RA | 892,455 | G→C | 7.4% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 8.0% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 8.0% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 899,656 | T→C | 6.5% | intergenic (+11/+188) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 899,657 | G→A | 6.6% | intergenic (+12/+187) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 915,080 | G→C | 5.1% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 5.1% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 922,314:1 | +C | 6.1% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 940,751 | T→C | 5.5% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 6.7% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 987,560 | G→C | 8.1% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 8.1% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,015,912 | T→A | 6.7% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 5.4% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 5.4% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,039,479 | G→A | 5.5% | V62I (GTC→ATC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,039,480 | T→C | 5.5% | V62A (GTC→GCC) ‡ | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,052,257 | C→T | 6.7% | intergenic (+17/+32) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,260 | T→C | 6.3% | intergenic (+20/+29) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,261 | G→A | 6.1% | intergenic (+21/+28) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,264 | A→G | 5.9% | intergenic (+24/+25) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,113,548 | T→C | 5.7% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,129,394 | G→C | 6.8% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,145,954 | C→T | 5.6% | intergenic (+55/+57) | rluC → / ← yceF | 23S rRNA pseudouridine(955,2504,2580) synthase/m(7)GTP pyrophosphatase |
| RA | 1,159,335 | G→T | 5.1% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 5.1% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,174,077 | G→A | 5.2% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 5.2% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,196,803 | A→C | 7.0% | intergenic (+430/+64) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,196,804 | G→T | 7.1% | intergenic (+431/+63) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,202,957 | G→T | 6.2% | intergenic (‑24/‑67) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,202,959 | T→A | 6.1% | intergenic (‑26/‑65) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,202,961 | A→C | 6.4% | intergenic (‑28/‑63) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,273,229 | A→T | 8.3% | intergenic (+27/+17) | chaC → / ← ychN | cation transport regulator/putative sulfur relay protein |
| JC JC | 1,292,988 | IS1 (+) +9 bp | 32.3% | intergenic (‑66/‑531) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| JC JC | 1,293,037 | IS1 (+) +9 bp | 29.0% | intergenic (‑115/‑482) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,311,830 | A→G | 6.0% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 6.0% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,335,681 | T→C | 5.1% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 5.8% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,672,258 | T→C | 5.1% | L100P (CTG→CCG) | ydgD → | putative peptidase |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,736,097 | T→A | 6.7% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 6.7% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,764,693 | C→T | 6.7% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,795,227 | A→T | 9.1% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 9.1% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 9.4% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,797,388 | G→T | 9.3% | P186Q (CCG→CAG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,797,391 | A→C | 7.9% | L185R (CTG→CGG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,810,062 | T→C | 6.8% | intergenic (+14/‑149) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,065 | T→G | 5.9% | intergenic (+17/‑146) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,066 | C→A | 5.9% | intergenic (+18/‑145) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,069 | G→A | 6.9% | intergenic (+21/‑142) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,827,811 | T→G | 5.5% | K150T (AAA→ACA) | astB ← | succinylarginine dihydrolase |
| RA | 1,827,816 | C→A | 5.3% | L148L (CTG→CTT) | astB ← | succinylarginine dihydrolase |
| RA | 1,829,322 | A→C | 6.9% | L138R (CTG→CGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,328 | C→G | 6.8% | G136A (GGC→GCC) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,865,682 | G→C | 8.1% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,901,947 | T→G | 29.6% | intergenic (‑362/‑101) | yoaE ← / → manX | putative membrane protein/conserved protein/fused mannose‑specific PTS enzymes: IIA component/IIB component |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 6.1% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,442 | Δ1 bp | 7.9% | intergenic (+14/+65) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,987,450:1 | +A | 8.1% | intergenic (+22/+57) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 2,090,122 | A→G | 6.6% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 6.7% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 6.5% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,171,814 | A→G | 5.5% | intergenic (‑87/+19) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,305,085 | A→G | 15.4% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 15.8% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 15.8% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,311,616 | C→T | 5.3% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,383,956 | A→T | 6.1% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 6.3% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,457,128 | T→A | 5.4% | M678L (ATG→TTG) | fadJ ← | enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,457,131 | T→A | 5.4% | I677L (ATA→TTA) | fadJ ← | enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,457,138 | C→G | 6.2% | V674V (GTG→GTC) | fadJ ← | enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,462,677 | A→T | 5.9% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 5.7% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 5.3% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,536,246 | C→A | 100% | P138Q (CCG→CAG) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,637,439 | C→A | 5.3% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,646,746 | C→T | 5.8% | A194T (GCA→ACA) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| RA | 2,706,134 | Δ1 bp | 5.2% | coding (991/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,714,238 | G→A | 7.3% | intergenic (+8/+201) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,714,244 | T→C | 7.3% | intergenic (+14/+195) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,714,249 | G→A | 7.5% | intergenic (+19/+190) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,724,095 | C→A | 7.4% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 7.3% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 6.4% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,736,911 | C→T | 6.0% | intergenic (+28/‑243) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,913 | T→A | 6.0% | intergenic (+30/‑241) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,914 | T→A | 6.1% | intergenic (+31/‑240) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,916 | A→G | 6.1% | intergenic (+33/‑238) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,768,614 | A→C | 5.0% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,778,123 | G→T | 5.2% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 5.0% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,800,515 | C→A | 5.4% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 5.4% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,814,175 | T→A | 5.2% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,845,792 | C→T | 5.4% | R227H (CGT→CAT) | hycE ← | hydrogenase 3, large subunit |
| RA | 2,906,608 | G→C | 5.6% | intergenic (+25/+35) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,918,017 | C→T | 5.0% | intergenic (+204/+28) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,019 | G→T | 5.1% | intergenic (+206/+26) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,020 | A→C | 5.0% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,022 | A→G | 5.2% | intergenic (+209/+23) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,972,652 | A→T | 5.8% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,972,653 | A→T | 5.8% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 3,020,510 | G→T | 9.2% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 9.1% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 9.2% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,057,140 | A→G | 5.8% | intergenic (+152/+38) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 5.8% | intergenic (+157/+33) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,150 | C→T | 5.0% | intergenic (+162/+28) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,059,703 | A→T | 5.2% | intergenic (‑2/‑50) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,059,704 | A→T | 5.2% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,098,515 | G→C | 7.9% | intergenic (+112/+43) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,098,518 | C→T | 7.8% | intergenic (+115/+40) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,098,519 | A→G | 7.8% | intergenic (+116/+39) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,098,522 | G→C | 7.6% | intergenic (+119/+36) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,107,875 | A→G | 5.8% | I427I (ATT→ATC) ‡ | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,107,876 | A→C | 5.8% | I427S (ATT→AGT) ‡ | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,107,879 | G→T | 5.7% | A426D (GCT→GAT) ‡ | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,107,880 | C→T | 5.8% | A426T (GCT→ACT) ‡ | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,156,590 | C→A | 8.5% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 8.4% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,180,497 | Δ1 bp | 8.6% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 10.4% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 10.2% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,513:1 | +A | 8.0% | coding (93/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 7.7% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 7.4% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,202,003 | G→C | 5.6% | G38A (GGC→GCC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,009 | A→T | 5.8% | Q40L (CAG→CTG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,012 | A→T | 5.8% | Q41L (CAG→CTG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,239,609 | T→G | 6.1% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,318,079 | A→T | 5.2% | intergenic (‑73/+134) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,328,182 | A→T | 6.0% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 5.6% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 5.5% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,330,415 | Δ1 bp | 5.1% | intergenic (+19/+167) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,419:1 | +T | 5.1% | intergenic (+23/+163) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,334,703 | A→G | 5.9% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 6.0% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 6.1% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,374,260 | G→A | 5.5% | A77V (GCA→GTA) | nanR ← | sialic acid‑inducible nan operon repressor |
| RA | 3,407,293 | T→A | 5.7% | intergenic (+27/‑82) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,294 | T→A | 5.8% | intergenic (+28/‑81) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,295 | T→A | 5.7% | intergenic (+29/‑80) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,439,588 | G→C | 6.7% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 6.7% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,476,585 | G→A | 5.1% | intergenic (‑145/+22) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,476,586 | T→C | 6.1% | intergenic (‑146/+21) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,708,595 | G→A | 5.3% | intergenic (‑890/+21) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,596 | T→A | 5.2% | intergenic (‑891/+20) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,597 | T→C | 5.2% | intergenic (‑892/+19) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,714,163:1 | +T | 8.2% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 7.9% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,781,051 | C→G | 6.4% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,891,502 | C→G | 5.5% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 5.2% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 5.3% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 4,007,054 | C→T | 6.4% | C397C (TGC→TGT) | recQ → | ATP‑dependent DNA helicase |
| RA | 4,015,333 | A→T | 5.5% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,060,261 | G→T | 5.7% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 5.7% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,062,371 | A→T | 5.9% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,116,937 | T→C | 84.4% | K96E (AAG→GAG) | glpK ← | glycerol kinase |
| RA | 4,122,658 | G→C | 5.0% | P228A (CCA→GCA) | ftsN ← | essential cell division protein |
| RA | 4,188,501 | A→G | 22.1% | D1051G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,235,581 | T→A | 5.7% | intergenic (+174/‑325) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,274,740 | G→A | 7.4% | intergenic (+79/+20) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,742 | T→A | 7.7% | intergenic (+81/+18) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,744 | T→C | 7.5% | intergenic (+83/+16) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,289,094 | T→A | 6.9% | I444N (ATT→AAT) | nrfA → | nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,296,060 | C→T | 20.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,312,080 | G→C | 6.0% | intergenic (‑38/+21) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 5.9% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 5.8% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,314,227 | A→T | 7.5% | intergenic (+30/+117) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,233 | A→T | 7.4% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,239 | A→T | 5.2% | intergenic (+42/+105) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,336,974 | A→T | 5.2% | S20T (TCG→ACG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,362,528 | G→A | 5.3% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 5.1% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,381,396 | G→C | 7.1% | P308R (CCG→CGG) | frdA ← | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| RA | 4,381,403 | A→C | 7.1% | S306A (TCC→GCC) | frdA ← | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| RA | 4,392,617 | C→G | 5.2% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,426,592 | T→A | 6.0% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,479,012 | A→T | 10.4% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 10.0% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 9.4% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,520,500 | Δ1 bp | 5.8% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 5.7% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,549,932 | T→A | 5.3% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,614,383 | G→A | 6.2% | intergenic (+123/+297) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423753–3424234 | 3424557–3424238 | 5–805 | 44 [41] | [43] 44 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 39883 | 86 (0.890) | 6 (0.060) | 6/252 | NT | 6.8% | coding (504/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | NC_000913 | = 39906 | 83 (0.900) | coding (481/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
| * | ? | NC_000913 | = 66609 | 99 (1.030) | 8 (0.080) | 7/260 | NT | 7.8% | noncoding (45/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 66643 | 91 (0.950) | noncoding (79/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 190665 | 99 (1.030) | 9 (0.100) | 5/250 | NT | 8.7% | intergenic (+66/‑192) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts |
| ? | NC_000913 | = 190685 | 95 (1.030) | intergenic (+86/‑172) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.040) | 4/244 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 6 (0.060) | 6/262 | NT | 12.2% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1293015 = | 43 (0.450) | intergenic (‑93/‑512) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 5 (0.050) | 5/248 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1207790 = | 32 (0.330) | 53 (0.630) | 37/230 | NT | 61.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 39 (0.460) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 27 (0.280) | 38 (0.450) | 34/230 | NT | 54.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 39 (0.460) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293124 = | 75 (0.780) | 5 (0.050) | 5/262 | NT | 6.2% | intergenic (‑202/‑403) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1300693 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1293196 = | 88 (0.910) | 8 (0.080) | 7/262 | NT | 8.3% | intergenic (‑274/‑331) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1300693 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 96 (1.030) | 77/254 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 3 (0.030) | 3/250 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3721045 = | 124 (1.290) | 274 (2.870) | 135/260 | NT | 69.7% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 115 (1.200) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 4136837 = | 59 (0.610) | 4 (0.040) | 4/250 | NT | 6.8% | coding (730/906 nt) | yijE | EamA‑like transporter family protein |
| ? | NC_000913 | 4136866 = | 54 (0.590) | coding (759/906 nt) | yijE | EamA‑like transporter family protein | |||||