mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 156 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4639198 = | 77 (0.820) | 4 (0.050) | 4/188 | NT | 4.4% | coding (1021/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | 4639248 = | 101 (1.150) | coding (1071/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | = 4638367 | 90 (0.960) | 4 (0.050) | 3/188 | NT | 4.6% | coding (190/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | = 4638387 | 81 (0.920) | coding (210/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | = 4621981 | 124 (1.330) | 4 (0.050) | 4/188 | NT | 3.2% | coding (213/1332 nt) | yjjJ | putative protein kinase |
| ? | NC_000913 | = 4622003 | 122 (1.390) | coding (235/1332 nt) | yjjJ | putative protein kinase | |||||
| * | ? | NC_000913 | 4546905 = | 126 (1.350) | 6 (0.070) | 6/186 | NT | 4.3% | coding (1810/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | NC_000913 | 4546951 = | 150 (1.730) | coding (1856/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| * | ? | NC_000913 | = 4534139 | 94 (1.010) | 4 (0.050) | 4/180 | NT | 4.4% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 91 (1.080) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4523274 = | 114 (1.220) | 4 (0.040) | 4/192 | NT | 3.6% | coding (821/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | 4523298 = | 104 (1.160) | coding (797/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | 4404334 = | 22 (0.240) | 4 (0.050) | 3/188 | NT | 15.5% | intergenic (+30/‑52) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein |
| ? | NC_000913 | 4404361 = | 23 (0.260) | intergenic (+57/‑25) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein | |||||
| * | ? | NC_000913 | = 4332094 | NA (NA) | 8 (0.100) | 5/180 | NT | 10.5% | intergenic (+90/‑22) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator |
| ? | NC_000913 | = 4332102 | 68 (0.810) | intergenic (+98/‑14) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||
| * | ? | NC_000913 | 4194511 = | 94 (1.010) | 4 (0.050) | 4/190 | NT | 4.5% | coding (1589/1896 nt) | thiC | phosphomethylpyrimidine synthase |
| ? | NC_000913 | 4194541 = | 81 (0.910) | coding (1559/1896 nt) | thiC | phosphomethylpyrimidine synthase | |||||
| * | ? | NC_000913 | = 4160055 | 179 (1.920) | 3 (0.030) | 3/184 | NT | 1.8% | coding (736/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble |
| ? | NC_000913 | = 4160081 | 159 (1.850) | coding (710/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble | |||||