mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.6% | 342.1 / 245.8 | 260 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,152 | 0 | A | G | 22.9% | 191.6 / 23.2 | 105 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 3,781,145 | 0 | C | G | 20.9% | 291.0 / 21.2 | 111 | intergenic (+128/‑70) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Marginal new junction evidence (lowest skew 10 of 122 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 139 (0.990) | 16 (0.140) | 14/166 | 11.5 | 11.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 127 (1.080) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 382205 | NA (NA) | 14 (0.100) | 11/196 | 15.0 | NA | noncoding (946/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382224 | NA (NA) | noncoding (965/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1104922 = | 185 (1.310) | 9 (0.070) | 9/180 | 15.2 | 5.2% | intergenic (+20/‑39) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| ? | NC_000913 | 1104944 = | 163 (1.270) | intergenic (+42/‑17) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein | |||||
| * | ? | NC_000913 | 662673 = | 155 (1.100) | 8 (0.060) | 7/178 | 16.4 | 5.6% | intergenic (‑31/+79) | ybeD/dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| ? | NC_000913 | 662697 = | 133 (1.050) | intergenic (‑55/+55) | ybeD/dacA | UPF0250 family protein/D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) | |||||
| * | ? | NC_000913 | 2090108 = | 153 (1.090) | 7 (0.060) | 6/170 | 16.5 | 5.3% | intergenic (+62/‑84) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| ? | NC_000913 | 2090141 = | 120 (0.990) | intergenic (+95/‑51) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase | |||||
| * | ? | NC_000913 | = 4289212 | 132 (0.940) | 7 (0.050) | 7/184 | 16.8 | 5.3% | intergenic (+12/‑33) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c |
| ? | NC_000913 | = 4289220 | 129 (0.990) | intergenic (+20/‑25) | nrfA/nrfB | nitrite reductase, formate‑dependent, cytochrome/nitrite reductase, formate‑dependent, penta‑heme cytochrome c | |||||
| * | ? | NC_000913 | = 3852844 | 125 (0.890) | 6 (0.050) | 6/176 | 16.9 | 5.3% | intergenic (‑60/+46) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | = 3852855 | 105 (0.840) | intergenic (‑71/+35) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | = 3106991 | 139 (0.990) | 6 (0.050) | 6/176 | 16.9 | 4.4% | intergenic (+21/+29) | nupG/speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| ? | NC_000913 | = 3107001 | 137 (1.100) | intergenic (+31/+19) | nupG/speC | nucleoside transporter/ornithine decarboxylase, constitutive | |||||
| * | ? | NC_000913 | 2788660 = | 189 (1.340) | 6 (0.050) | 6/176 | 16.9 | 3.5% | intergenic (+11/‑325) | ygaQ/csiD | uncharacterized protein; putative enzyme/carbon starvation protein |
| ? | NC_000913 | 2788688 = | 162 (1.300) | intergenic (+39/‑297) | ygaQ/csiD | uncharacterized protein; putative enzyme/carbon starvation protein | |||||
| * | ? | NC_000913 | 1889904 = | 169 (1.200) | 6 (0.050) | 6/176 | 16.9 | 4.0% | intergenic (‑158/+47) | fadD/yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated |
| ? | NC_000913 | 1889931 = | 135 (1.080) | intergenic (‑185/+20) | fadD/yeaY | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)/Slp family lipoprotein, RpoE‑regulated | |||||