mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 1310 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4639713 | 148 (1.060) | 6 (0.040) | 6/172 | NT | 3.8% | coding (594/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA |
| ? | NC_000913 | = 4639734 | 164 (1.220) | coding (573/717 nt) | arcA | response regulator in two‑component regulatory system with ArcB or CpxA | |||||
| * | ? | NC_000913 | = 4638653 | 131 (0.940) | 4 (0.030) | 4/166 | NT | 3.1% | coding (476/1353 nt) | creD | inner membrane protein |
| ? | NC_000913 | = 4638668 | 130 (1.000) | coding (491/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913 | = 4636809 | 141 (1.010) | 5 (0.040) | 5/164 | NT | 3.5% | coding (114/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | = 4636834 | 144 (1.120) | coding (139/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| * | ? | NC_000913 | 4635842 = | 148 (1.060) | 7 (0.050) | 7/166 | NT | 4.8% | coding (322/474 nt) | creA | putative periplasmic protein |
| ? | NC_000913 | 4635880 = | 139 (1.070) | coding (360/474 nt) | creA | putative periplasmic protein | |||||
| * | ? | NC_000913 | 4634391 = | 153 (1.100) | 12 (0.090) | 7/164 | NT | 8.1% | coding (595/648 nt) | ytjC | phosphatase |
| ? | NC_000913 | 4634423 = | 130 (1.010) | coding (627/648 nt) | ytjC | phosphatase | |||||
| * | ? | NC_000913 | 4630216 = | 139 (1.000) | 10 (0.080) | 6/164 | NT | 7.8% | coding (307/1668 nt) | ettA | energy‑dependent translational throttle A |
| ? | NC_000913 | 4630244 = | 108 (0.840) | coding (279/1668 nt) | ettA | energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | 4629401 = | 146 (1.050) | 4 (0.030) | 3/164 | NT | 3.1% | coding (1122/1668 nt) | ettA | energy‑dependent translational throttle A |
| ? | NC_000913 | 4629431 = | 119 (0.930) | coding (1092/1668 nt) | ettA | energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | = 4629147 | 104 (0.750) | 9 (0.070) | 4/168 | NT | 8.4% | coding (1376/1668 nt) | ettA | energy‑dependent translational throttle A |
| ? | NC_000913 | = 4629161 | 97 (0.740) | coding (1362/1668 nt) | ettA | energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | 4628815 = | 163 (1.170) | 4 (0.030) | 3/164 | NT | 2.5% | noncoding (121/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628845 = | 157 (1.220) | intergenic (+298/+10) | nadR/ettA | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/energy‑dependent translational throttle A | |||||
| * | ? | NC_000913 | = 4627665 | 128 (0.920) | 6 (0.050) | 6/170 | NT | 4.6% | coding (351/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor |
| ? | NC_000913 | = 4627683 | 127 (0.950) | coding (369/1233 nt) | nadR | trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor | |||||