mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 349,801 | 0 | C | T | 34.1% | 92.7 / 68.1 | 88 | intergenic (+229/‑211) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| * | NC_000913 | 3,705,984 | 0 | T | G | 26.2% | 231.5 / 94.5 | 107 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| * | NC_000913 | 3,705,985 | 0 | T | C | 26.2% | 207.9 / 73.1 | 107 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| * | NC_000913 | 349,785 | 0 | A | G | 25.4% | 83.9 / 29.6 | 55 | intergenic (+213/‑227) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| * | NC_000913 | 3,705,970 | 0 | G | A | 22.3% | 212.6 / 50.8 | 95 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| * | NC_000913 | 3,705,971 | 0 | C | A | 22.1% | 249.1 / 61.5 | 95 | intergenic (‑181/+127) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| * | NC_000913 | 3,706,048 | 0 | G | T | 21.7% | 268.7 / 53.3 | 110 | intergenic (‑258/+50) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Marginal new junction evidence (lowest skew 10 of 413 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 225281 | NA (NA) | 17 (0.240) | 10/188 | 8.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 3250977 = | 69 (0.920) | 8 (0.120) | 8/174 | 8.7 | 11.8% | intergenic (+23/‑47) | yqjF/yqjG | putative quinol oxidase subunit/putative S‑transferase |
| ? | NC_000913 | 3251005 = | 59 (0.900) | intergenic (+51/‑19) | yqjF/yqjG | putative quinol oxidase subunit/putative S‑transferase | |||||
| * | ? | NC_000913 | = 1068490 | NA (NA) | 8 (0.120) | 8/182 | 9.0 | NA | intergenic (+236/+21) | ymdF/rutG | KGG family protein/pyrimidine permease |
| ? | NC_000913 | = 1068495 | NA (NA) | intergenic (+241/+16) | ymdF/rutG | KGG family protein/pyrimidine permease | |||||
| * | ? | NC_000913 | 2464211 = | 99 (1.320) | 7 (0.110) | 7/172 | 9.1 | 7.3% | intergenic (+141/+41) | yfdF/mlaA | uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| ? | NC_000913 | 2464243 = | 91 (1.400) | intergenic (+173/+9) | yfdF/mlaA | uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 10 (0.140) | 8/188 | 9.3 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 2700568 | 67 (0.900) | 6 (0.100) | 5/160 | 9.7 | 10.3% | intergenic (‑371/+50) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | NC_000913 | = 2700581 | 51 (0.850) | intergenic (‑384/+37) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | 2700550 = | 73 (0.980) | 6 (0.100) | 5/160 | 9.7 | 9.8% | intergenic (‑353/+68) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | NC_000913 | 2700601 = | 51 (0.850) | intergenic (‑404/+17) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | 2662484 = | NA (NA) | 7 (0.100) | 7/184 | 9.7 | 15.2% | noncoding (176/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662542 = | 42 (0.560) | noncoding (234/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2662367 = | NA (NA) | 7 (0.100) | 7/184 | 9.7 | 11.9% | noncoding (59/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662386 = | 56 (0.750) | noncoding (78/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2440284 = | 73 (0.980) | 8 (0.160) +33 bp |
3/132 | 9.7 | 14.2% | intergenic (‑164/+101) | yfcJ/fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| ? | NC_000913 | 3650712 = | NA (NA) | noncoding (1/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||