mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 58 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,428,216 | 0 | C | T | 72.3% | 250.9 / 117.4 | 148 | V89I (GTC→ATC) | rffE | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| * | minE | 705,870 | 0 | A | G | 63.2% | 5.9 / 15.6 | 19 | intergenic (‑367/+128) | ymcC/serX | predicted outer membrane lipoprotein/tRNA‑Ser |
| * | minE | 1,763,636 | 0 | A | G | 55.9% | ‑0.9 / 78.0 | 59 | noncoding (208/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 419,492 | 1 | . | T | 50.0% | 33.4 / 46.5 | 24 | coding (1091/1176 nt) | ubiF | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
| * | minE | 2,406,948 | 1 | . | C | 46.4% | 169.8 / 236.3 | 97 | coding (513/2547 nt) | cyaA | adenylate cyclase |
| * | minE | 2,699,267 | 0 | G | T | 44.0% | 39.7 / 59.9 | 50 | A48A (GCG→GCT) | yrfC | predicted fimbrial assembly protein |
| * | minE | 1,517,987 | 0 | T | A | 43.8% | 23.8 / 60.8 | 48 | I70F (ATT→TTT) | folC | bifunctional folylpolyglutamate synthase and dihydrofolate synthase |
| * | minE | 1,948,809 | 0 | G | A | 43.2% | 19.0 / 56.2 | 44 | N3N (AAC→AAT) | gcvH | glycine cleavage complex lipoylprotein |
| * | minE | 1,687,752 | 0 | C | G | 42.2% | 23.5 / 52.5 | 45 | intergenic (‑133/+9) | sseB/pepB | rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B |
| * | minE | 1,461,181 | 0 | G | A | 42.1% | 31.1 / 47.0 | 38 | pseudogene (774/4605 nt) pseudogene (774/4104 nt) | yfaS yfaS | ECK2220:JW2222+JW2221:b4500; hypothetical protein ECK2220:JW2222:b2228; hypothetical protein, N‑ter fragment |
| * | minE | 1,461,183 | 0 | T | . | 42.1% | 66.5 / 61.2 | 38 | pseudogene (772/4605 nt) pseudogene (772/4104 nt) | yfaS yfaS | ECK2220:JW2222+JW2221:b4500; hypothetical protein ECK2220:JW2222:b2228; hypothetical protein, N‑ter fragment |
| * | minE | 1,566,599 | 0 | G | . | 40.4% | 132.2 / 79.8 | 57 | coding (351/1257 nt) | yfeO | predicted ion channel protein |
| * | minE | 2,600,278 | 1 | . | C | 39.5% | 7.2 / 73.3 | 38 | intergenic (‑131/‑72) | yhiR/prlC | predicted DNA (exogenous) processing protein/oligopeptidase A |
| * | minE | 1,763,556 | 0 | T | C | 36.8% | 145.3 / 171.2 | 153 | noncoding (288/1542 nt) | rrsG | 16S ribosomal RNA |
| * | minE | 2,132,611 | 1 | . | G | 33.3% | 17.9 / 37.0 | 24 | coding (337/1890 nt) | deaD | ATP‑dependent RNA helicase |
| * | minE | 2,132,611 | 2 | . | C | 33.3% | 17.5 / 37.0 | 24 | coding (337/1890 nt) | deaD | ATP‑dependent RNA helicase |
| * | minE | 2,132,611 | 3 | . | C | 33.3% | 17.5 / 37.0 | 24 | coding (337/1890 nt) | deaD | ATP‑dependent RNA helicase |
| * | minE | 1,345,435 | 1 | . | C | 32.4% | 29.4 / 52.8 | 34 | coding (415/1140 nt) | wza | lipoprotein required for capsular polysaccharide translocation through the outer membrane |
| * | minE | 483,906 | 1 | . | C | 31.8% | 47.5 / 67.4 | 44 | coding (1110/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| * | minE | 526,369 | 0 | G | T | 31.6% | 73.3 / 27.6 | 38 | V11L (GTA→TTA) | ybhL | predicted inner membrane protein |