mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3646590 | NA (NA) | 14 (0.250) | 6/134 | 3.8 | 20.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3654548 = | 55 (1.000) | coding (775/3114 nt) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
| * | ? | CP009273 | = 1590464 | 74 (1.340) | 12 (0.220) | 5/134 | 4.2 | 14.0% | pseudogene (1781/5323 nt) | yneO | pseudogene, AidA homolog |
| ? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 2060834 | NA (NA) | 4 (0.070) | 4/132 | 4.6 | 6.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3654548 = | 55 (1.000) | coding (775/3114 nt) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
| * | ? | CP009273 | = 943537 | 50 (0.900) | 3 (0.060) | 3/130 | 5.1 | 5.7% | coding (853/1431 nt) | ycaM | putative transporter |
| ? | CP009273 | = 943543 | 50 (0.930) | coding (859/1431 nt) | ycaM | putative transporter | |||||
| * | ? | KX077536 | 7817 = | 1764 (1.070) | 8 (0.010) | 6/126 | 8.8 | 0.50% | coding (402/660 nt) | unknown | cat |
| ? | KX077536 | 7827 = | 1547 (1.000) | coding (412/660 nt) | unknown | cat | |||||
| * | ? | Exported | 1057 = | 8639 (0.900) | 3 (0.000) +21 bp |
3/92 | 9.0 | 0.087% | coding (47/1224 nt) | fdh | formate dehydrogenase from Pseudomonas sp. 101 with an N‑terminal his‑tag |
| ? | KX077536 | = 6665 | 1345 (0.820) | coding (22/660 nt) | unknown | CA | |||||
| * | ? | KX077536 | 2624 = | NA (NA) | 9 (0.010) | 5/128 | 9.3 | NA | coding (206/981 nt) | unknown | transposase |
| ? | KX077536 | 2633 = | NA (NA) | coding (215/981 nt) | unknown | transposase | |||||
| * | ? | KX077536 | 7544 = | 1885 (1.150) | 7 (0.000) | 4/126 | 9.7 | 0.39% | coding (129/660 nt) | unknown | cat |
| ? | KX077536 | 7554 = | 1763 (1.140) | coding (139/660 nt) | unknown | cat | |||||
| * | ? | KX077536 | 897 = | 743 (0.450) | 6 (0.000) | 4/126 | 9.7 | 1.0% | intergenic (–/‑202) | –/unknown | –/BLA |
| ? | KX077536 | 906 = | 453 (0.290) | intergenic (–/‑193) | –/unknown | –/BLA | |||||
| * | ? | Exported | 3273 = | 2551 (0.260) | 5 (0.000) | 4/126 | 9.7 | 0.34% | intergenic (+1039/–) | fdh/– | formate dehydrogenase from Pseudomonas sp. 101 with an N‑terminal his‑tag/– |
| ? | KX077536 | 901 = | 520 (0.340) | intergenic (–/‑198) | –/unknown | –/BLA | |||||