mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 9119 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 221,544 | 0 | A | . | 68.2% | 53.6 / 22.7 | 47 | coding (78/654 nt) | metI | L‑methionine/D‑methionine ABC transporter membrane subunit |
| * | NC_000913 | 255,885 | 0 | T | . | 67.7% | 16.7 / 11.9 | 32 | intergenic (‑169/‑92) | pepD/gpt | peptidase D/xanthine‑guanine phsophoribosyltransferase |
| * | NC_000913 | 2,114,738 | 1 | . | A | 67.6% | 60.9 / 12.3 | 37 | coding (1159/1395 nt) | wcaM | putative colanic acid biosynthesis protein WcaM |
| * | NC_000913 | 1,153,201 | 1 | . | A | 66.7% | 86.2 / 11.4 | 36 | intergenic (+21/‑99) | fabF/pabC | beta‑ketoacyl‑[acyl carrier protein] synthase II/aminodeoxychorismate lyase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 66.7% | 2.9 / 13.7 | 20 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 307,931 | 0 | T | . | 64.4% | 32.7 / 25.6 | 50 | coding (1402/2526 nt) | ecpC | putative fimbrial usher protein EcpC |
| * | NC_000913 | 2,033,729 | 0 | G | . | 64.3% | 11.2 / 12.6 | 14 | noncoding (81/91 nt) | rseX | small regulatory RNA RseX |
| * | NC_000913 | 3,631,020 | 0 | T | . | 64.3% | 26.2 / 19.3 | 43 | coding (1571/1623 nt) | yhiJ | DUF4049 domain‑containing protein YhiJ |
| * | NC_000913 | 3,660,928 | 0 | T | . | 64.1% | 0.1 / 25.2 | 39 | coding (515/3114 nt) | mdtF | multidrug efflux pump RND permease MdtF |
| * | NC_000913 | 336,865 | 0 | G | . | 63.6% | ‑0.8 / 13.8 | 22 | coding (88/1548 nt) | yahF | putative acyl‑CoA synthetase YahF |
| * | NC_000913 | 2,107,964 | 1 | . | T | 62.5% | 40.5 / 10.2 | 25 | coding (366/1104 nt) | glf | UDP‑galactopyranose mutase |
| * | NC_000913 | 3,045,284 | 0 | A | . | 62.5% | 5.4 / 10.6 | 25 | coding (618/744 nt) | ygfF | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| * | NC_000913 | 2,579,720 | 0 | C | . | 61.8% | 35.5 / 37.2 | 34 | coding (85/2004 nt) | tktB | transketolase 2 |
| * | NC_000913 | 1,122,704 | 0 | C | . | 61.3% | 9.5 / 31.9 | 31 | intergenic (‑97/+9) | pyrC/yceB | dihydroorotase/putative lipid‑binding lipoprotein YceB |
| * | NC_000913 | 618,084 | 0 | T | . | 61.1% | ‑1.8 / 10.1 | 18 | intergenic (+46/‑170) | entF/fepE | apo‑serine activating enzyme/polysaccharide co‑polymerase family protein FepE |
| * | NC_000913 | 925,568 | 0 | C | . | 61.1% | ‑3.0 / 11.4 | 18 | intergenic (+28/+316) | clpA/serW | ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser |
| * | NC_000913 | 2,230,398 | 0 | A | . | 61.1% | 25.8 / 40.7 | 55 | intergenic (‑13/‑226) | dusC/yohJ | tRNA‑dihydrouridine(16) synthase/PF03788 family membrane protein YohJ |
| * | NC_000913 | 2,447,045 | 0 | T | . | 61.0% | 3.9 / 25.1 | 41 | coding (429/1086 nt) | aroC | chorismate synthase |
| * | NC_000913 | 4,376,735 | 0 | T | . | 60.9% | 3.8 / 11.6 | 24 | intergenic (+36/‑140) | ecnB/gdx | bacteriolytic entericidin B lipoprotein/guanidinium exporter |
| * | NC_000913 | 1,584,928 | 0 | T | . | 60.8% | 32.2 / 28.9 | 51 | coding (1559/2280 nt) | ydeP | putative oxidoreductase YdeP |
| Marginal new junction evidence (lowest skew 10 of 284 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2932488 | 6038 (98.830) | 260 (4.260) +AAA |
56/376 | 0.0 | 4.1% | coding (526/1149 nt) | fucO | L‑1,2‑propanediol oxidoreductase |
| ? | NC_000913 | 2932489 = | 6133 (98.820) | coding (525/1149 nt) | fucO | L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | NC_000913 | = 2932199 | 4029 (66.300) | 897 (14.680) +AAA |
151/374 | 0.0 | 18.2% | coding (815/1149 nt) | fucO | L‑1,2‑propanediol oxidoreductase |
| ? | NC_000913 | 2932200 = | 4051 (65.280) | coding (814/1149 nt) | fucO | L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | NC_000913 | = 1547221 | 413 (6.910) | 103 (1.690) +TTT |
53/368 | 0.0 | 19.6% | intergenic (‑52/‑180) | yddG/fdnG | aromatic amino acid exporter/formate dehydrogenase N subunit alpha |
| ? | NC_000913 | 1547222 = | 429 (6.910) | intergenic (‑53/‑179) | yddG/fdnG | aromatic amino acid exporter/formate dehydrogenase N subunit alpha | |||||
| * | ? | NC_000913 | = 1514196 | 545 (9.110) | 104 (1.700) +TTT |
55/368 | 0.0 | 15.8% | coding (366/942 nt) | ydcU | putative ABC transporter membrane subunit YdcU |
| ? | NC_000913 | 1514197 = | 558 (8.990) | coding (367/942 nt) | ydcU | putative ABC transporter membrane subunit YdcU | |||||
| * | ? | NC_000913 | = 1508212 | 605 (9.750) | 123 (1.980) | 64/388 | 0.0 | 16.9% | coding (1432/1962 nt) | rlhA | 23S rRNA 5‑hydroxycytidine C2501 synthase |
| ? | NC_000913 | 1508216 = | 609 (9.810) | coding (1436/1962 nt) | rlhA | 23S rRNA 5‑hydroxycytidine C2501 synthase | |||||
| * | ? | NC_000913 | = 1494689 | 949 (15.290) | 84 (1.370) | 54/384 | 0.0 | 8.2% | coding (383/924 nt) | ydcI | putative DNA‑binding transcriptional repressor YdcI |
| ? | NC_000913 | 1494693 = | 943 (15.350) | coding (379/924 nt) | ydcI | putative DNA‑binding transcriptional repressor YdcI | |||||
| * | ? | NC_000913 | = 1492675 | 892 (14.370) | 94 (1.540) | 64/382 | 0.0 | 9.7% | coding (206/1641 nt) | trg | methyl‑accepting chemotaxis protein Trg |
| ? | NC_000913 | 1492679 = | 864 (14.140) | coding (210/1641 nt) | trg | methyl‑accepting chemotaxis protein Trg | |||||
| * | ? | NC_000913 | = 1489964 | 757 (12.590) | 86 (1.410) +TTT |
53/370 | 0.0 | 10.1% | pseudogene (750/1001 nt) | gapC | glyceraldehyde‑3‑phosphate dehydrogenase |
| ? | NC_000913 | 1489965 = | 779 (12.550) | pseudogene (749/1001 nt) | gapC | glyceraldehyde‑3‑phosphate dehydrogenase | |||||
| * | ? | NC_000913 | = 367402 | 3894 (62.750) | 141 (2.270) | 91/388 | 0.0 | 3.5% | coding (109/1083 nt) | lacI | DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | 367406 = | 3810 (61.390) | coding (105/1083 nt) | lacI | DNA‑binding transcriptional repressor LacI | |||||
| * | ? | NC_000913 | = 366528 | 4326 (71.560) | 256 (4.190) +TTT |
80/372 | 0.0 | 5.5% | coding (983/1083 nt) | lacI | DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | 366529 = | 4447 (71.660) | coding (982/1083 nt) | lacI | DNA‑binding transcriptional repressor LacI | |||||