mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 27 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 310,934 | 0 | A | C | 57.1% | ‑4.3 / 31.0 | 28 | F135V (TTC→GTC) | ecpR | DNA‑binding transcriptional dual regulator MatA |
| * | NC_000913 | 2,087,406 | 0 | A | C | 52.6% | 8.8 / 29.8 | 19 | W285G (TGG→GGG) | yeeY | putative DNA‑binding transcriptional regulator YeeY |
| * | NC_000913 | 3,352,754 | 0 | A | C | 48.1% | 7.0 / 26.9 | 27 | V91G (GTG→GGG) | arcB | sensory histidine kinase ArcB |
| * | NC_000913 | 395,291 | 0 | C | G | 44.4% | 10.4 / 35.1 | 27 | G333R (GGT→CGT) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 395,288 | 0 | A | T | 44.0% | 9.2 / 33.7 | 25 | F334I (TTC→ATC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 2,280,704 | 0 | A | C | 43.8% | 11.5 / 11.7 | 16 | T25P (ACC→CCC) | radD | putative DNA repair helicase RadD |
| * | NC_000913 | 395,294 | 0 | C | G | 43.5% | 2.2 / 30.7 | 23 | G332R (GGC→CGC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 42.1% | 39.2 / 95.3 | 76 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 794,976 | 0 | T | C | 37.0% | 28.6 / 10.9 | 27 | intergenic (+54/‑113) | acrZ/modA | multidrug efflux pump accessory protein AcrZ/molybdate ABC transporter periplasmic binding protein |
| * | NC_000913 | 151,656 | 0 | T | G | 33.3% | 66.8 / 36.7 | 48 | A192A (GCA→GCC) | yadL | putative fimbrial protein YadL |
| * | NC_000913 | 424,518 | 0 | A | C | 33.3% | 37.7 / 13.4 | 27 | V134G (GTG→GGG) | acpH | acyl carrier protein phosphodiesterase |
| * | NC_000913 | 1,374,034 | 0 | G | . | 33.3% | 33.9 / 22.3 | 18 | coding (813/882 nt) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,711,796 | 0 | A | C | 32.4% | 53.5 / 21.7 | 34 | T92P (ACC→CCC) | nth | endonuclease III |
| * | NC_000913 | 2,349,621 | 0 | A | C | 31.8% | 24.6 / 19.4 | 22 | intergenic (‑149/‑66) | inaA/yfaH | putative lipopolysaccharide kinase InaA/putative uncharacterized protein YfaH |
| * | NC_000913 | 1,632,523 | 0 | A | C | 30.8% | 97.2 / 16.3 | 52 | intergenic (‑238/‑367) | ydfJ/ynfT | putative transporter YdfJ/Qin prophage; protein YnfT |
| * | NC_000913 | 2,710,279 | 0 | A | C | 30.8% | 61.2 / 27.2 | 39 | intergenic (‑115/‑141) | rseD/nadB | rpoE leader peptide/L‑aspartate oxidase |
| * | NC_000913 | 3,563,481 | 0 | T | G | 29.0% | 59.7 / 17.1 | 31 | V490G (GTG→GGG) | glpD | aerobic glycerol 3‑phosphate dehydrogenase |
| * | NC_000913 | 1,374,036 | 0 | T | G | 28.6% | 29.2 / 13.5 | 21 | L272R (CTC→CGC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,374,038 | 0 | T | C | 28.6% | 26.5 / 10.5 | 21 | F273L (TTC→CTC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 2,648,148 | 0 | A | C | 27.6% | 52.1 / 13.0 | 29 | G1380G (GGT→GGG) | yfhM | alpha2‑macroglobulin |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 30 (0.560) | 3 (0.060) | 3/116 | 3.1 | 7.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 53 (1.150) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||