mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 459,278 | Δ69 bp | coding (391‑459/2355 nt) | lon → | Lon protease |
| JC JC | 486,122 | IS1 (+) +8 bp | coding (362‑369/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| RA | 803,662 | C→A | L54I (CTT→ATT) | ybhJ → | putative hydratase YbhJ |
| RA | 1,619,325 | G→A | G69E (GGA→GAA) | marR → | DNA‑binding transcriptional repressor MarR |
| RA | 1,903,280 | G→A | G67S (GGT→AGT) | manY → | mannose‑specific PTS enzyme IIC component |
| RA | 1,905,761 | G→A | G25D (GGT→GAT) | mntP → | Mn(2(+)) exporter |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| JC JC | 3,397,946 | IS5 (+) +4 bp | coding (430‑433/594 nt) | yhdE ← | nucleoside triphosphate pyrophosphatase YhdE |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,390,754 | G→T | A252A (GCC→GCA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423715–3424234 | 3424588–3424238 | 5–874 | 8 [7] | [2] 8 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 481457 = | 24 (0.450) | 26 (0.540) | 20/120 | 0.4 | 55.0% | coding (2947/3150 nt) | acrB | multidrug efflux pump RND permease AcrB |
| ? | NC_000913 | = 481487 | 21 (0.440) | coding (2917/3150 nt) | acrB | multidrug efflux pump RND permease AcrB | |||||
| * | ? | NC_000913 | 1207790 = | 4 (0.070) | 55 (1.350) | 27/102 | 0.1 | 87.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 13 (0.320) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 4 (0.070) | 42 (1.030) | 21/102 | 0.2 | 84.0% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 13 (0.320) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 67 (1.330) | 32/126 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 68 (1.270) | 32/134 | 0.1 | 57.1% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3844020 | 51 (0.960) | coding (57/1767 nt) | adeD | adenine deaminase | |||||
| * | ? | NC_000913 | 2068944 = | NA (NA) | 6 (0.120) | 6/128 | 2.4 | NA | noncoding (1328/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 2070275 | NA (NA) | intergenic (‑95/‑2) | insC‑3/yoeA | CP4‑44 prophage; IS2 insertion element repressor InsA/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA | |||||
| * | ? | NC_000913 | = 4542690 | 37 (0.690) | 13 (0.280) | 8/116 | 1.7 | 23.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 53 (1.150) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||