mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 212,802 | C→A | R158S (CGC→AGC) | tilS → | tRNA(Ile)‑lysidine synthetase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 309,204 | C→T | P43P (CCG→CCA) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 714,888 | G→T | S444I (AGC→ATC) | pgm → | phosphoglucomutase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,142,095 | G→T | A758E (GCG→GAG) | rne ← | ribonuclease E |
| RA | 1,169,410 | C→A | intergenic (+80/+2) | bhsA → / ← ldtC | DUF1471 domain‑containing multiple stress resistance outer membrane protein BhsA/L,D‑transpeptidase YcfS |
| RA | 1,434,461 | G→T | intergenic (‑55/+497) | ynaM ← / ← ttcC | Rac prophage; protein YnaM/putative tRNA 2‑thiocytidine (s(2)C32) synthase |
| RA | 1,492,002 | T→G | T24P (ACC→CCC) D43A (GAC→GCC) |
hokB ← mokB ← |
toxin HokB putative regulatory protein MokB |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,856,493 | G→T | P146T (CCA→ACA) | ydjH ← | putative sugar kinase YdjH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,365,279 | C→A | S114S (TCG→TCT) | ais ← | putative lipopolysaccharide core heptose(II)‑phosphate phosphatase |
| RA | 3,127,430 | C→A | A198S (GCG→TCG) | glcD ← | glycolate dehydrogenase, putative FAD‑linked subunit |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,444,419 | G→T | R41S (CGT→AGT) | rplO ← | 50S ribosomal subunit protein L15 |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,955,598 | C→A | H90N (CAC→AAC) | ilvA → | threonine deaminase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102955 | 3104055 | 1101 | 34 [33] | [33] 34 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423768–3424232 | 3424525–3424238 | 7–758 | 35 [32] | [27] 34 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 131 (1.080) | 39 (0.360) | 30/246 | 1.8 | 26.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 105 (0.980) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 154 (1.300) | 76/270 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 226 (1.860) | 220 (1.820) | 86/276 | 0.0 | 65.1% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 11 (0.090) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 138 (1.130) | 66/278 | 0.3 | 93.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 9 (0.070) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||