mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 25.4% | 79.5 / 24.1 | 56 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 29 (0.600) | 8 (0.180) | 8/272 | 4.8 | 19.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 39 (0.860) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3946053 | 5 (0.100) | 7 (0.150) | 5/282 | 6.4 | 59.0% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3385184 | 64 (1.320) | 5 (0.110) | 5/280 | 6.4 | 7.4% | intergenic (+11/‑354) | argR/yhcN | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator/cadmium and peroxide resistance protein, stress‑induced |
| ? | NC_000913_3_pae_tpiA | = 3385197 | 64 (1.370) | intergenic (+24/‑341) | argR/yhcN | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator/cadmium and peroxide resistance protein, stress‑induced | |||||
| * | ? | NC_000913_3_pae_tpiA | = 228108 | NA (NA) | 7 (0.150) | 5/282 | 6.4 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 1343551 = | 48 (0.990) | 4 (0.090) | 4/266 | 6.6 | 8.2% | intergenic (‑223/+46) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family |
| ? | NC_000913_3_pae_tpiA | 1343581 = | 46 (1.030) | intergenic (‑253/+16) | osmB/yciT | osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3986614 | 66 (1.360) | 4 (0.090) | 4/268 | 6.7 | 6.2% | noncoding (183/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913_3_pae_tpiA | = 3986622 | 60 (1.340) | noncoding (191/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | 2071331 = | 75 (1.550) | 4 (0.090) | 4/270 | 6.7 | 5.3% | noncoding (15/195 nt) | isrC | novel sRNA, CP4‑44; putative prophage remnant |
| ? | NC_000913_3_pae_tpiA | 2071358 = | 73 (1.620) | noncoding (42/195 nt) | isrC | novel sRNA, CP4‑44; putative prophage remnant | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3227830 | 52 (1.070) | 4 (0.090) | 4/274 | 6.8 | 7.3% | coding (30/1071 nt) | ygjJ | putative periplasmic protein |
| ? | NC_000913_3_pae_tpiA | = 3227835 | 53 (1.160) | coding (35/1071 nt) | ygjJ | putative periplasmic protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3105531 | 49 (1.010) | 4 (0.090) | 4/274 | 6.8 | 8.0% | intergenic (+19/‑183) | mltC/nupG | membrane‑bound lytic murein transglycosylase C/nucleoside transporter |
| ? | NC_000913_3_pae_tpiA | = 3105537 | 46 (1.000) | intergenic (+25/‑177) | mltC/nupG | membrane‑bound lytic murein transglycosylase C/nucleoside transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | 3741741 = | 48 (0.990) | 4 (0.090) | 4/280 | 6.9 | 8.1% | coding (792/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon |
| ? | NC_000913_3_pae_tpiA | 3741759 = | 45 (0.960) | coding (774/849 nt) | yiaJ | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon | |||||