mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 39,378 | C→A | D586Y (GAT→TAT) | mecA ← | penicillin binding protein 2 prime |
| RA | 367,644 | G→T | intergenic (‑96/‑20) | nanA ← / → nagC | N‑acetylneuraminate lyase/possible transcriptional regulator |
| RA | 423,247 | A→G | V112V (GTA→GTG) | USA300HOU_0394 → | hypothetical protein |
| RA | 454,656 | G→A | V119I (GTT→ATT) | set23 → | staphylococcal exotoxin |
| RA | 479,553 | G→A | A194T (GCA→ACA) | USA300HOU_0458 → | hypothetical protein |
| RA | 638,614 | G→T | T14K (ACA→AAA) | thiD ← | phosphomethylpyrimidine kinase |
| RA | 707,879 | A→T | L11I (TTA→ATA) | mntB ← | ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 790,778 | G→A | intergenic (+277/‑197) | kipA → / → ltaS | possible allophanate hydrolase subunit 2/possible phosphatidylglycerol‑‑membrane‑oligosaccharide glycerophosphotransferase |
| RA | 911,610 | G→A | intergenic (‑221/‑107) | USA300HOU_0869 ← / → sufC | hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,232,465 | G→C | A124P (GCG→CCG) | prkC → | non‑specific serine/threonine protein kinase |
| MC JC | 1,302,967 | Δ4 bp | coding (325‑328/714 nt) | USA300HOU_1209 → | possible GntR family transcriptional regulator |
| RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,419,527 | G→T | P7T (CCT→ACT) | USA300HOU_1317 ← | hypothetical membrane protein |
| RA | 1,440,007 | Δ1 bp | coding (34/201 nt) | cspA ← | cold shock protein CspA |
| RA | 1,474,639 | C→G | A9129P (GCA→CCA) | ebh ← | extracellular matrix binding protein |
| RA | 1,481,355 | G→T | A6890E (GCA→GAA) | ebh ← | extracellular matrix binding protein |
| RA | 1,513,930 | A→T | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 1,672,434 | C→T | A187T (GCA→ACA) | rpoD ← | DNA‑directed RNA polymerase sigma subunit RpoD |
| RA | 1,744,454 | C→T | G73D (GGC→GAC) | apt ← | adenine phosphoribosyltransferase |
| RA | 1,797,772 | G→C | R7G (CGC→GGC) | phoR ← | sensor histidine kinase |
| RA | 1,944,670 | G→A | intergenic (‑251/‑713) | splA ← / → USA300HOU_1807 | S1B family serine protease SplA/hypothetical protein |
| RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,026,655 | C→T | E87K (GAA→AAA) | vraR ← | response regulator VraR |
| RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,289,325 | C→A | Q55H (CAG→CAT) | ybbP ← | hypothetical membrane protein |
| RA | 2,386,119 | G→A | P114L (CCG→CTG) | USA300HOU_2245 ← | hypothetical protein |
| RA | 2,502,141 | C→A | A222D (GCC→GAC) | USA300HOU_2364 → | AraC transcriptional regulator |
| RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| RA | 2,679,462 | (A)8→7 | intergenic (+334/‑55) | USA300HOU_2535 → / → cbpD | hypothetical protein/possible secretory antigen |
| RA | 2,710,898 | (T)6→5 | coding (29/1812 nt) | oatA ← | possible acetyltransferase |
| RA | 2,856,087 | T→A | P80P (CCT→CCA) | USA300HOU_2698 → | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 512620 = | 38 (1.110) | 32 (1.310) +40 bp |
26/198 | 0.1 | 54.2% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||