mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,513,930 | A→T | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 512620 = | 62 (0.840) | 46 (0.870) +40 bp |
33/204 | 0.5 | 50.8% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||
| * | ? | CP000730 | 1747377 = | 21 (0.280) | 46 (0.660) | 39/268 | 0.8 | 69.8% | coding (2072/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| ? | CP000730 | = 1747373 | 20 (0.290) | coding (2076/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter | |||||
| * | ? | CP000730 | = 2501187 | 21 (0.280) | 51 (0.770) | 36/256 | 0.9 | 69.4% | intergenic (+1198/‑290) | USA300HOU_2363/USA300HOU_2364 | hypothetical protein/AraC transcriptional regulator |
| ? | CP000730 | 2504202 = | 26 (0.390) | intergenic (+620/‑138) | USA300HOU_2364/USA300HOU_2365 | AraC transcriptional regulator/hypothetical protein | |||||