mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 392 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 48.6% | 106.3 / 15.6 | 74 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 357,890 | 0 | C | A | 47.4% | 29.5 / 23.6 | 38 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,413,735 | 0 | A | T | 46.9% | 63.7 / 50.4 | 64 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 2,921,173 | 0 | T | C | 46.2% | 69.0 / 12.2 | 52 | I310V (ATT→GTT) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 357,880 | 0 | T | C | 45.2% | 48.6 / 12.6 | 42 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,376,505 | 0 | A | C | 44.9% | 117.3 / 26.8 | 69 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,556,200 | 0 | G | A | 44.3% | 80.2 / 37.4 | 70 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 4,378,802 | 0 | A | C | 44.3% | 117.4 / 16.7 | 70 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 535,918 | 0 | A | G | 43.5% | 82.4 / 13.3 | 63 | E70G (GAG→GGG) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 2,252,646 | 0 | T | G | 42.0% | 132.7 / 11.8 | 69 | V316G (GTA→GGA) | yeiI | putative kinase |
| * | NC_000913 | 3,995,457 | 0 | T | G | 41.9% | 109.3 / 12.8 | 63 | G232G (GGT→GGG) | dapF | diaminopimelate epimerase |
| * | NC_000913 | 1,097,581 | 0 | A | G | 41.7% | 114.7 / 19.3 | 72 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 1,413,751 | 0 | A | C | 41.3% | 103.3 / 21.0 | 63 | N59K (AAT→AAG) | ralR | Rac prophage; restriction alleviation protein |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.2% | 93.9 / 42.8 | 80 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,350,844 | 0 | A | C | 41.2% | 121.9 / 12.3 | 68 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 357,875 | 0 | A | T | 40.9% | 57.5 / 22.1 | 45 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,448,025 | 0 | A | G | 40.7% | 79.6 / 11.4 | 54 | G169G (GGA→GGG) | feaB | phenylacetaldehyde dehydrogenase |
| * | NC_000913 | 357,887 | 0 | C | A | 40.5% | 39.5 / 15.5 | 37 | L268F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 446,976 | 0 | A | C | 40.3% | 112.6 / 17.5 | 62 | W244G (TGG→GGG) | cyoE | protoheme IX farnesyltransferase |
| * | NC_000913 | 4,346,675 | 0 | T | G | 40.2% | 143.1 / 20.2 | 87 | T218P (ACC→CCC) | fumB | anaerobic class I fumarate hydratase (fumarase B) |