mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 168 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,159 | 0 | G | A | 62.2% | 1.7 / 49.6 | 45 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 2,421,443 | 0 | A | C | 61.2% | 29.9 / 62.2 | 50 | Y40S (TAC→TCC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 3,443,277 | 0 | A | C | 57.6% | 36.1 / 48.4 | 33 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 1,376,505 | 0 | A | C | 52.3% | 42.3 / 64.4 | 44 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 4,004,454 | 0 | T | G | 52.0% | 32.5 / 40.6 | 25 | T82P (ACC→CCC) | yigI | 4HBT thioesterase family protein |
| * | NC_000913 | 907,602 | 0 | A | C | 51.7% | 34.9 / 46.5 | 29 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 3,947,850 | 0 | C | T | 51.5% | 25.6 / 50.0 | 33 | E40K (GAA→AAA) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 2,421,437 | 0 | T | C | 48.1% | 50.4 / 22.4 | 53 | I38T (ATC→ACC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 987,494 | 0 | T | G | 47.8% | 65.0 / 10.8 | 46 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 5,162 | 0 | T | A | 47.7% | 34.7 / 27.5 | 45 | intergenic (+142/‑72) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 4,604,344 | 0 | C | T | 47.6% | 33.1 / 19.6 | 42 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 213,341 | 0 | A | G | 47.3% | 64.4 / 21.3 | 55 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 2,421,397 | 0 | G | A | 46.7% | 49.3 / 30.4 | 45 | E25K (GAA→AAA) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 3,862,667 | 0 | G | A | 46.0% | 21.9 / 15.2 | 37 | pseudogene (937/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 3,029,959 | 0 | A | C | 45.5% | 66.8 / 10.7 | 44 | C325G (TGT→GGT) | ygfT | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
| * | NC_000913 | 3,177,748 | 0 | C | A | 45.5% | 41.8 / 32.7 | 55 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 2,185,199 | 0 | T | G | 45.0% | 50.3 / 10.8 | 40 | T35P (ACC→CCC) | thiM | hydoxyethylthiazole kinase |
| * | NC_000913 | 3,423,287 | 0 | G | C | 44.7% | 54.5 / 16.1 | 38 | intergenic (+93/+136) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,508,662 | 0 | T | A | 44.7% | 52.4 / 13.6 | 38 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 1,576,077 | 0 | C | A | 44.4% | 44.5 / 17.1 | 36 | D515Y (GAT→TAT) | yddB | putative TonB‑dependent outer membrane receptor |