mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 615 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,621,118 | 0 | A | C | 49.3% | 82.5 / 31.5 | 76 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 2,921,177 | 0 | A | C | 45.5% | 99.4 / 19.3 | 66 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 941,713 | 0 | T | G | 45.1% | 69.4 / 14.3 | 52 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 1,080,837 | 0 | G | T | 43.7% | 62.7 / 37.2 | 71 | intergenic (+24/‑519) | putP/efeU | proline:sodium symporter/ferrous iron permease (pseudogene) |
| * | NC_000913 | 599,576 | 0 | T | G | 43.5% | 93.2 / 23.3 | 62 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 2,434,882 | 0 | T | G | 43.5% | 107.2 / 22.5 | 69 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,483,268 | 0 | T | A | 41.7% | 105.0 / 37.2 | 72 | L24F (TTA→TTT) | emrK | multidrug resistance efflux pump membrane fusion protein |
| * | NC_000913 | 3,261,055 | 0 | A | C | 41.2% | 98.2 / 18.4 | 69 | V455G (GTG→GGG) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| * | NC_000913 | 2,921,173 | 0 | T | C | 41.1% | 101.9 / 32.7 | 73 | I310V (ATT→GTT) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 3,270,455 | 0 | G | T | 41.1% | 59.9 / 28.1 | 56 | intergenic (+853/+170) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 516,925 | 0 | T | G | 40.9% | 98.5 / 10.3 | 66 | S115A (TCG→GCG) | fetB | iron export ABC transporter permease; peroxide resistance protein |
| * | NC_000913 | 646,747 | 0 | T | G | 40.8% | 118.3 / 11.9 | 72 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 1,764,785 | 0 | T | A | 40.6% | 97.4 / 43.8 | 69 | intergenic (‑399/+149) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 802,118 | 0 | A | C | 40.5% | 122.0 / 11.7 | 74 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 4,604,350 | 0 | C | T | 40.3% | 76.9 / 31.1 | 63 | S64F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 2,828,506 | 0 | T | G | 40.0% | 100.5 / 27.1 | 77 | V257G (GTG→GGG) | srlD | sorbitol‑6‑phosphate dehydrogenase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 40.0% | 60.2 / 30.2 | 55 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 4,033,612 | 0 | T | G | 40.0% | 92.0 / 12.3 | 62 | G156G (GGT→GGG) | trkH | potassium transporter |
| * | NC_000913 | 1,684,712 | 0 | A | C | 39.7% | 123.8 / 16.3 | 74 | T152P (ACC→CCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 1,080,856 | 0 | T | G | 39.7% | 112.4 / 12.9 | 68 | intergenic (+43/‑500) | putP/efeU | proline:sodium symporter/ferrous iron permease (pseudogene) |