mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 1162 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,639,187 | 0 | T | C | 52.4% | 39.8 / inf | 275 | intergenic (+46/+198) | pitA/uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| * | NC_000913 | 3,660,455 | 0 | A | G | 49.8% | 16.3 / inf | 279 | V14V (GTA→GTG) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated |
| * | NC_000913 | 3,691,334 | 0 | T | C | 49.2% | 19.3 / inf | 334 | D425G (GAC→GGC) | bcsB | regulator of cellulose synthase, cyclic di‑GMP binding |
| * | NC_000913 | 3,643,787 | 0 | T | C | 49.0% | 32.9 / inf | 264 | T466A (ACC→GCC) | prlC | oligopeptidase A |
| * | NC_000913 | 3,630,409 | 0 | T | C | 49.0% | 11.9 / inf | 259 | E65G (GAA→GGA) | yhiI | putative membrane fusion protein (MFP) of efflux pump |
| * | NC_000913 | 3,717,408 | 0 | A | G | 48.9% | 43.5 / inf | 284 | P33P (CCA→CCG) | ghrB | glyoxylate/hydroxypyruvate reductase B |
| * | NC_000913 | 2,361,337 | 0 | A | C | 48.6% | 171.2 / 19.8 | 110 | G26G (GGT→GGG) | rhmD | L‑rhamnonate dehydratase |
| * | NC_000913 | 357,890 | 0 | C | A | 47.2% | 67.8 / 68.4 | 91 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,643,155 | 0 | G | A | 46.2% | 47.5 / inf | 276 | Y676Y (TAC→TAT) | prlC | oligopeptidase A |
| * | NC_000913 | 3,660,408 | 0 | A | G | 44.9% | 137.1 / inf | 286 | intergenic (+19/‑6) | mdtE/mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated/anaerobic multidrug efflux transporter, ArcA‑regulated |
| * | NC_000913 | 357,880 | 0 | T | C | 44.0% | 110.5 / 38.7 | 91 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,506,028 | 0 | A | C | 43.7% | 261.4 / 10.1 | 136 | V18G (GTA→GGA) | ydcO | BenE family inner membrane putative transporter |
| * | NC_000913 | 941,713 | 0 | T | G | 42.9% | 193.3 / 50.5 | 119 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 599,576 | 0 | T | G | 41.8% | 220.3 / 49.8 | 122 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,350,844 | 0 | A | C | 41.8% | 225.9 / 17.7 | 122 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 1,755,862 | 0 | C | A | 41.7% | 163.4 / 63.0 | 97 | S55R (AGC→AGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.7% | 161.4 / 92.9 | 145 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 357,875 | 0 | A | T | 41.5% | 136.3 / 47.7 | 94 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,332,791 | 0 | A | C | 41.1% | 271.2 / 29.5 | 141 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 2,001,918 | 0 | A | C | 40.9% | 240.4 / 34.8 | 128 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |