mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 544 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,350,853 | 0 | A | C | 56.7% | 70.0 / 97.9 | 67 | S725A (TCA→GCA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 1,097,433 | 0 | G | C | 52.4% | 2.8 / 33.5 | 22 | intergenic (+604/+132) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| * | NC_000913 | 2,434,882 | 0 | T | G | 51.4% | 85.7 / 118.4 | 70 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 1,825,056 | 0 | G | A | 51.4% | 58.5 / 113.9 | 72 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 646,747 | 0 | T | G | 50.6% | 106.0 / 134.7 | 78 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 3,423,297 | 0 | G | C | 49.0% | 122.6 / 60.3 | 99 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,350,844 | 0 | A | C | 47.8% | 93.7 / 14.2 | 67 | L728V (TTA→GTA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 3,556,205 | 0 | A | C | 46.1% | 132.4 / 11.8 | 76 | S215R (AGT→AGG) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 3,412,898 | 0 | C | T | 46.0% | 45.9 / 68.2 | 74 | A190T (GCC→ACC) | acrS | acrAB operon transcriptional repressor |
| * | NC_000913 | 2,781,645 | 0 | A | C | 45.7% | 119.5 / 15.1 | 70 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 3,423,287 | 0 | G | C | 45.5% | 127.2 / 60.9 | 101 | intergenic (+93/+136) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,556,200 | 0 | G | A | 44.2% | 78.0 / 41.7 | 77 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 2,547,772 | 0 | T | G | 43.8% | 119.0 / 15.0 | 73 | V367G (GTA→GGA) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| * | NC_000913 | 4,378,802 | 0 | A | C | 43.4% | 141.3 / 16.8 | 77 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 1,825,061 | 0 | G | A | 43.2% | 82.7 / 42.6 | 74 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 4,555,109 | 0 | T | A | 43.1% | 62.4 / 30.6 | 58 | N178K (AAT→AAA) | uxuR | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| * | NC_000913 | 1,356,201 | 0 | T | G | 42.6% | 119.8 / 12.1 | 68 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 40,515 | 0 | G | T | 42.4% | 94.1 / 32.9 | 66 | Q473K (CAA→AAA) | caiT | putative transporter |
| * | NC_000913 | 4,536,197 | 0 | A | T | 42.2% | 84.1 / 62.0 | 71 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 40,522 | 0 | T | G | 42.2% | 101.3 / 13.3 | 65 | K470N (AAA→AAC) | caiT | putative transporter |